What's New - Rice Genome Annotation Project
Legacy updates can be found on the Legacy What's New Updates page.
- A new paper (https://doi.org/10.1093/nar/gkae1061) describing the recent updates for the Rice Genome Annotation Project website has been published in Nucleic Acids Research.
- The Rice Genome Annotation Project website has been updated. The genome browser has been updated to Jbrowse2. The gene expression and coexpression data and webpages have also been updated. There is also a new syntelogs page with data for two new syntelog data sets. A new data download page has been released with the updated datasets and user friendly filenames and formats. The website has also been upgraded to use HTTPS for security and better compatibility with modern web browsers.
- The Buell Lab has moved to the University of Georgia! The new URL for the Rice Genome Annotation Project (RGAP) website is rice.uga.edu.
- A paper describing the unified Os-Nipponbare-Reference-IRGSP-1.0 pseudomolecules and MSU Rice Genome Annotation Project Release 7 has been published in the journal Rice:
- Kawahara, Y., de la Bastide, M., Hamilton J. P., Kanamori, H., McCombie, W. R., Ouyang, S., Schwartz, D. C., Tanaka, T., Wu, J., Zhou, S., Childs, K. L., Davidson, R. M., Lin, H., Quesada-Ocampo, L., Vaillancourt, B., Sakai, H., Lee, S. S., Kim, J., Numa, H., Itoh, T., Buell, C. R., Matsumoto, T. 2013. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice 6:4.
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.