Rice Genome Facts
RGAP Rice Genome Annotation, Release 7
| Features | TE-related Genes/Loci |
Non-TE-related Genes/Loci |
|---|---|---|
| Gene Number | 16,941 | 39,045 |
| Average Gene Size (bp) | 3,223 | 2,853 |
| Average Exon/Gene | 4.2 | 4.9 |
| Average Exon Length (bp) | 512 | 318 |
| Average Intron/Gene | 3.2 | 3.9 |
| Average Intron Length (bp) | 346 | 418 |
Updated on 10/31/11
Genes from RGAP Rice Genome Annotation, Release 7
| Functional Classification c |
Genes/Loci | Genes/Loci (%) |
Gene Models | Gene Models (%) |
|---|---|---|---|---|
| Putative | 22,896 | 40.9% | 31,047 | 46.8% |
| Expressed | 13,816 | 24.7% | 15,686 | 23.6% |
| Conserved Hypothetical | 133 | 0.2% | 133 | 0.2% |
| Hypothetical | 2,200 | 3.9% | 2,200 | 3.3% |
| TE-related d | 16,941 | 30.3% | 17,272 | 26.0% |
| Total | 55,986 | 100% | 66,338 | 100% |
c: Small gene models (< 50 amino acids ) and pseudogenes were excluded from this analysis.
d:TE-related: Transposable-element related genes and gene
models. The rice proteome was searched against
the MSU Oryza Repeat Database with TBLASTN and
against the TE-related Pfam domains with hmmpfam. Genes and gene models with matches above cut-offs
were annotated as TE-related gene models.
Updated on 10/31/11
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.