Rice Gene Expression

Expression data were generated from a curated set of 80 mRNA-seq libraries from the NCBI Sequence Read Archive (SRA). Transcript abundances were quantified for each gene model as Transcripts Per Million (TPM) using Kallisto (v0.51.0). Transcript abunances for the mRNA-seq libraries are reported for each gene model on the gene report page and the entire gene expression matrix can be downloaded below. In addition, the mRNA-seq libraries were aligned to the genome assembly and can be viewed as RNA-seq Coverage tracks in the Genome Browser.

Download the complete gene expression matrix for all rice genes:

• osa1_r7.all_models.gene_exp_matrix.txt.gz - Gene expression matrix (TPM) for all gene models
• osa1_r7.all_models.gene_exp_matrix.xlsx - Gene expression matrix (TPM) for all gene models, Excel format

mRNA-seq Libraries in the Gene Expression Matrix

This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.