Rice Genome Annotation Project BLAST Search

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blastn blastx tblastx tblastn blastp

Search a nucleotide database using a nucleotide query sequence.

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Genes in MSU RGAP Release 7 - Genomic Sequences Genes in MSU RGAP Release 7 - CDS Sequences Os-Nipponbare-Reference-IRGSP-1.0 Pseudomolecules Rice Marker Sequences Rice full length cDNAs in GenBank Rice FSTs BGI Indica Contigs Oryza Repeat Database TAIR Arabidopsis Annotation Release 10 CDS TAIR Arabidopsis Annotation Release 10 Genomic Arabidopsis Col-CEN (v1.2)Genome Assembly	Select the database to search using blastn.
Genes in MSU RGAP Release 7 - Protein Sequences TAIR Arabidopsis Annotation Release 10 Protein	Select the database to search using blastx.

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Optional BLAST Parameters

Expect Threshold:	1e-200 1e-100 1e-50 1e-20 1e-10 1e-5 1e-4 1e-3 1e-2 1e-1 1 10 100 1000
Max Number of Alignments Reported:	1 5 10 20 50
Word Length:	7 11 15
Word Length:	2 3
Filter:	none DUST
Filter:	none SEG
Matrix:	PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.