Rice CENTRORADIALIS-like homologs to the Arabidopsis TFL1 gene
| Contact: | Fabien Chardon |
| Organization: | INRA |
| Source: | Chardon, F., Damerval, C. (2005) Phylogenomic analysis of the PEBP gene family in cereals. Journal of Molecular Evolution. 61:579-590 |
| Criteria: | RCNs were identified initially as having the PEBP domain (Pfam 01161) and were grouped as a family after phylogenetic analysis. |
| Gene Name: | RCN2 |
| Gene Description: | Rice Centroradialis-like1 homologous to Arabidopsis TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | RCN2 Centroradialis-like1 homologous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AP005110 |
| Structural Annotation: | |
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| Gene Name: | RCN4 |
| Gene Description: | Rice Centroradialis-like1 homologous to Arabidopsis TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | RCN4 Centroradialis-like1 homologous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AL662947 |
| Structural Annotation: | |
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| Gene Name: | RCN1 |
| Alternate Gene Name: | FDR2 |
| Gene Description: | Rice Centroradialis-like1 homogous to Arabidopsis TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | RCN1 Centroradialis-like1 homogous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AC116949 |
| GenBank Protein Acc: | AAD42895 |
| Structural Annotation: | |
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| Gene Name: | RCN3 |
| Alternate Gene Name: | FDR1 |
| Gene Description: | Rice Centroradialis-like1 homogous to Arabidopsis TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | RCN3 Centroradialis-like1 homogous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AL929350 |
| GenBank Protein Acc: | AAD42896 |
| Structural Annotation: | |
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1 Nakagawa, M.m Shimamoto, K., Kyozuka, J. (2002) Overexpression of RCN1 and RCN2, rice TERMINAL FLOWER 1/CENTRORADIALIS homologues, confers delay of phase transition and altered panicle morphology in rice. Plant Journal. 29:743-750. 2 Izawa, T., Takahashi, Y., Yano, M. (2003) Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis. Current Opinion in Plant Biology. 6:113-120. |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.