LIM domain proteins
| Contact: | Dominique Arnaud |
| Organization: | INRA-Orl�ans, France |
| Source: | Arnaud D, D�jardin A, Lepl� J-C, Lesage-Descauses M-C, and Pilate G (2007) Genome-wide analysis of LIM gene family in Populus trichocarpa, Arabidopsis thaliana, and Oryza sativa. DNA Research 14:103-116. |
| Criteria: | BlastN search of rice LIM ESTs and cDNA (NCBI database), ClustalW alignment of EST-cDNA with genomic sequences, manual correction of genomic sequences, and phylogenetic relationships analysis using protein sequences of LIM domain proteins from other plants |
| Gene Name: | OsPLIM2a |
| Alternate Gene Name: | LIM protein, Pollen-specific protein SF3, LIM transcription factor, Transcription factor L2, transcription factor LIM, putative pollen specific LIM domain protein, transcription factor/ zinc ion binding |
| Gene Description: | LIM domain protein, putative actin-binding protein and transcription factor |
| MSU Annotation: | OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed |
| GenBank Genomic Acc: | AP004768, AP004133 |
| Comment: | CX102669, CX110344, CT857470 |
| Structural Annotation: | |
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| Gene Name: | OsWLIM2 |
| Alternate Gene Name: | LIM protein, Pollen-specific protein SF3, LIM transcription factor, Transcription factor L2, transcription factor LIM, putative pollen specific LIM domain protein, transcription factor/ zinc ion binding |
| Gene Description: | LIM domain protein, putative actin-binding protein and transcription factor |
| MSU Annotation: | OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed |
| GenBank Genomic Acc: | AC135208, AC135205 |
| Comment: | AK058507, CI519912, CI523985, CI617038, CI620179, CI543554, CI538315, CI622622, CI617552, CI633784, CI652148, CI540407, CI639306, CI638151, CI671132, CI404007, CI386274, CI386925, CI365575, CI239533, CI239425, CI205951, CI017677, CI370249, CI760431, CI759192, CI755408, CI757155, CI741865, CI738133, CI674209, CI669996, CI666708, CI665600, CI660605, CI452126, CI448829, CI447585, CI442479, CI443849, CI437751, CI425856, CI409115, CI542330, CF988467, CV721067, CV723028, CR290685, CD670811, CF323532, CB661166, CA764742, CA757302, CA757218, CA757153, AU030414, AU030413, D41587, D41047, BI806615, AU065317, AU097356, AU097257, AU095380, AU094518, BE229561, CI205413, CI203432, CI299865, CI167378, CI166019, CI252218, CI256325, CI262781, CI256087, CI155496, CI153213, CI151466, CI151094, CX099766, CK067379, CK050352, CK048790, CK010719, CK007452, CF991782, CF989701, CF989116, CF964299, CF956805, CF956160, CB640081, CB637788, |
| Structural Annotation: | |
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| Gene Name: | OsPLIM2b |
| Alternate Gene Name: | LIM protein, Pollen-specific protein SF3, LIM transcription factor, Transcription factor L2, transcription factor LIM, putative pollen specific LIM domain protein, transcription factor/ zinc ion binding |
| Gene Description: | LIM domain protein, putative actin-binding protein and transcription factor |
| MSU Annotation: | OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressed |
| GenBank Genomic Acc: | AL662984, AL663006 |
| Comment: | AK069907, CI602220, CI602035, CI594048, CI604129, CI588176, CI590066, CI585134, CI589963, CI589962, CI604664, CI364750, CI363627, CI361332, CI361109, CI352797, CI351331, CI339165, I346329, CI344904, CI344731, CI355186, CX103098, CA762291 |
| Structural Annotation: | |
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| Gene Name: | OsLIM |
| Alternate Gene Name: | LIM protein, Pollen-specific protein SF3, LIM transcription factor, Transcription factor L2, transcription factor LIM, putative pollen specific LIM domain protein, transcription factor/ zinc ion binding |
| Gene Description: | LIM domain protein, putative actin-binding protein and transcription factor |
| MSU Annotation: | OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed |
| GenBank Genomic Acc: | AP004995 |
| Comment: | AK102383, CI584223, CI708210, CI702815, CI474900, CI415424, CI695753, CI685958, CI682801, CI682792, CI677931, CI643352, CI380557, CI221273, CI143577, CI129521, CK082464, CB652481, CB096758, CA766405, CA762139, BI813117, AU032197 |
| Structural Annotation: | |
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| Gene Name: | OsPLIM2c |
| Alternate Gene Name: | LIM protein, Pollen-specific protein SF3, LIM transcription factor, Transcription factor L2, transcription factor LIM, putative pollen specific LIM domain protein, transcription factor/ zinc ion binding |
| Gene Description: | LIM domain protein, putative actin-binding protein and transcription factor |
| MSU Annotation: | OsPLIM2c - LIM domain protein, putative actin-binding protein and transcription factor, expressed |
| GenBank Genomic Acc: | AC078840, AE016959 |
| Comment: | AK072520, CI269531, CI274133, CI279950, CI274310, CI213605, CI221498, CI349183, CI350889, CI353597, CI358773, CI361614, CI589740, CI592202, CI590036, CI602439, CI602578, CI600126, CI602642, CI597857, CI533359, CI600625, CI595407, CI598388, CI598424, CI593605, CI591049, CI598842, CI599389, CI750944, C71856, C72613, AU172509, AU165380, AU165381, AU093784, AU063889, AU063991, AU029821, BP185090, AU312130, AU312031, CX109357, CI119876, CI121919, CI123493, CI123722, CI260083, CI357434, CI357449, CI358224, CI361733, CI346734, CI344848, CI344613, CI170274, CI280818, CI273110, CI277150, CI279164 |
| Structural Annotation: | |
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| Gene Name: | OsWLIM1 |
| Alternate Gene Name: | LIM protein, Pollen-specific protein SF3, LIM transcription factor, Transcription factor L2, transcription factor LIM, putative pollen specific LIM domain protein, transcription factor/ zinc ion binding |
| Gene Description: | LIM domain protein, putative actin-binding protein and transcription factor |
| MSU Annotation: | OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed |
| GenBank Genomic Acc: | AL837527 |
| Comment: | CT858133, CI006666, CI408900, CI452651, CI427587, CI467322, CI432583, CI448443, CI558188, CI491228, AU102059, CI642855, CI663369, CI427588, CI774151, CI674694, CI711101, CI688287, BX900604, AU102060 |
| Structural Annotation: | |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.