Core DNA replication machinery proteins

   
Contact: Randall Shultz
Organization: North Carolina State University
Source: Shultz, RW, Tatineni, VM, Hanely-Bowdoin, L, Thompson, WF (2007) Genome-wide Analysis of the Core DNA Replication Machinery in the Higher Plants Arabidopsis thaliana and Oryza sativa. Plant Physiology 144(4):1697-714
Criteria: Core DNA replication family proteins are essential for the initiation, elongation, and Okazaki fragment maturation stages of DNA replication. The core DNA replication machinery in rice was defined based on manual inspection of protein sequence alignments to well characterized yeast and animal sequences.
   

LOC_Os01g10690
Gene Name: POLD3
Gene Description: Putative DNA polymerase delta complex subunit
MSU Annotation: POLD3 - Putative DNA polymerase delta complex subunit, expressed
Structural Annotation:  

   

LOC_Os01g14610
Gene Name: PSF2
Gene Description: Putative GINS complex subunit
MSU Annotation: PSF2 - Putative GINS complex subunit, expressed
Structural Annotation:  

   

LOC_Os01g14980
Gene Name: RPA3
Gene Description: Putative single-stranded DNA binding complex subunit 3
MSU Annotation: RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed
Structural Annotation:  

   

LOC_Os01g36390
Gene Name: MCM4
Gene Description: Putative minichromosome maintenance (MCM) complex subunit 4
MSU Annotation: MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed
Structural Annotation:  

   

LOC_Os01g49010
Gene Name: ORC4
Gene Description: Putative origin recognition complex subunit 4
MSU Annotation: ORC4 - Putative origin recognition complex subunit 4, expressed
Structural Annotation:  

   

LOC_Os01g63710
Gene Name: CDC6
Gene Description: Putative DNA replication initiation protein
MSU Annotation: CDC6 - Putative DNA replication initiation protein, expressed
Structural Annotation:  

   

LOC_Os01g64820
Gene Name: POLA1
Gene Description: Putative DNA polymerase alpha catalytic subunit
MSU Annotation: POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed
Structural Annotation:  

   

LOC_Os02g30800
Gene Name: POLE1
Gene Description: Putative DNA polymerase epsilon catalytic subunit
MSU Annotation: POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed
Structural Annotation:  

   

LOC_Os02g42230
Gene Name: RPA2B
Gene Description: Putative single-stranded DNA binding complex subunit 2
MSU Annotation: RPA2B - Putative single-stranded DNA binding complex subunit 2, expressed
Structural Annotation:  

   

LOC_Os02g53500
Gene Name: RFC5
Gene Description: Putative clamp loader (of PCNA), replication factor C subunit 5
MSU Annotation: RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed
Structural Annotation:  

   

LOC_Os02g53680
Gene Name: RPA1A
Gene Description: Putative single-stranded DNA binding complex subunit 1
MSU Annotation: RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed
Structural Annotation:  

   

LOC_Os02g55410
Gene Name: MCM5
Gene Description: Putative minichromosome maintenance (MCM) complex subunit 5
MSU Annotation: MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed
Structural Annotation:  

   

LOC_Os02g56130
Gene Name: PCNA
Gene Description: Putative DNA replicative polymerase clamp
MSU Annotation: PCNA - Putative DNA replicative polymerase clamp, expressed
Structural Annotation:  

   

LOC_Os02g58220
Gene Name: RPA2A
Gene Description: Putative single-stranded DNA binding complex subunit 2
MSU Annotation: RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed
Structural Annotation:  

   

LOC_Os03g03650
Gene Name: POLD2
Gene Description: Putative DNA polymerase delta complex subunit
MSU Annotation: POLD2 - Putative DNA polymerase delta complex subunit, expressed
Structural Annotation:  

   

LOC_Os03g08640
Gene Name: ORC2
Gene Description: Putative origin recognition complex subunit 2
MSU Annotation: ORC2 - Putative origin recognition complex subunit 2, expressed
Structural Annotation:  

   

LOC_Os03g11540
Gene Name: RPA1B
Gene Description: Putative single-stranded DNA binding complex subunit 1
MSU Annotation: RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed
Structural Annotation:  

   

LOC_Os03g19190
Gene Name: TOPBP1C
Gene Description: Similar to DNA replication protein TOPBP1 from Human
MSU Annotation: TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed
Structural Annotation:  

   

LOC_Os03g55200
Gene Name: ORC5
Gene Description: Putative origin recognition complex subunit 5
MSU Annotation: ORC5 - Putative origin recognition complex subunit 5, expressed
Structural Annotation:  

   

LOC_Os03g57870
Gene Name: RFC3
Gene Description: Putative clamp loader (of PCNA), replication factor C subunit 3
MSU Annotation: RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed
Structural Annotation:  

   

LOC_Os03g61820
Gene Name: FEN1B
Gene Description: Putative flap endonuclease protein
MSU Annotation: FEN1B - Putative flap endonuclease protein, expressed
Structural Annotation:  

   

LOC_Os04g10650
Gene Name: CDT1A
Gene Description: Putative DNA replication initiation protein
MSU Annotation: CDT1A - Putative DNA replication initiation protein, expressed
Structural Annotation:  

   

LOC_Os04g48060
Gene Name: RFC2
Gene Description: Putative clamp loader (of PCNA), replication factor C subunit 2
MSU Annotation: RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed
Structural Annotation:  

   

LOC_Os04g49860
Gene Name: DNA2
Gene Description: Putative DNA replication helicase 2 protein
MSU Annotation: DNA2 - Putative DNA replication helicase 2 protein, expressed
Structural Annotation:  

   

LOC_Os05g02040
Gene Name: RPA1C
Gene Description: Putative single-stranded DNA binding complex subunit 1
MSU Annotation: RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed
Structural Annotation:  

   

LOC_Os05g05150
Gene Name: SLD5
Gene Description: Putative GINS complex subunit
MSU Annotation: SLD5 - Putative GINS complex subunit, expressed
Structural Annotation:  

   

LOC_Os05g06840
Gene Name: POLE2A
Gene Description: Putative DNA polymerase epsilon complex subunit
MSU Annotation: POLE2A - Putative DNA polymerase epsilon complex subunit, expressed
Structural Annotation:  

   

LOC_Os05g14590
Gene Name: MCM6
Gene Description: Putative minichromosome maintenance (MCM) complex subunit 6
MSU Annotation: MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed
Structural Annotation:  

   

LOC_Os05g29010
Gene Name: POLA4
Gene Description: Putative DNA polymerase alpha complex subunit
MSU Annotation: POLA4 - Putative DNA polymerase alpha complex subunit, expressed
Structural Annotation:  

   

LOC_Os05g37980
Gene Name: PSF1
Gene Description: Putative GINS complex subunit
MSU Annotation: PSF1 - Putative GINS complex subunit, expressed
Structural Annotation:  

   

LOC_Os05g38850
Gene Name: MCM8
Gene Description: Putative minichromosome maintenance (MCM) family subunit 8
MSU Annotation: MCM8 - Putative minichromosome maintenance MCM family subunit 8
Structural Annotation:  

   

LOC_Os05g39850
Gene Name: MCM3
Gene Description: Putative minichromosome maintenance (MCM) complex subunit 3
MSU Annotation: MCM3 - Putative minichromosome maintenance MCM complex subunit 3, expressed
Structural Annotation:  

   

LOC_Os05g46270
Gene Name: FEN1A
Gene Description: Putative flap endonuclease protein
MSU Annotation: FEN1A - Putative flap endonuclease protein, expressed
Structural Annotation:  

   

LOC_Os06g08790
Gene Name: ORC1
Gene Description: Putative origin recognition complex subunit 1
MSU Annotation: ORC1 - Putative origin recognition complex subunit 1, expressed
Structural Annotation:  

   

LOC_Os06g11500
Gene Name: MCM9
Gene Description: Putative minichromosome maintenance (MCM) family subunit 9
MSU Annotation: MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed
Structural Annotation:  

   

LOC_Os06g30320
Gene Name: NOC3
Gene Description: Putative nucleolar complex subunit 3
MSU Annotation: NOC3 - Putative nucleolar complex subunit 3, expressed
Structural Annotation:  

   

LOC_Os06g47830
Gene Name: RPA2C
Gene Description: Putative single-stranded DNA binding complex subunit 2
MSU Annotation: RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed
Structural Annotation:  

   

LOC_Os07g22400
Gene Name: POLA3
Gene Description: Putative DNA polymerase alpha complex subunit
MSU Annotation: POLA3 - Putative DNA polymerase alpha complex subunit, expressed
Structural Annotation:  

   

LOC_Os07g43540
Gene Name: ORC6
Gene Description: Putative origin recognition complex subunit 6
MSU Annotation: ORC6 - Putative origin recognition complex subunit 6, expressed
Structural Annotation:  

   

LOC_Os07g49010
Gene Name: TOPBP1B
Gene Description: Similar to DNA replication protein TOPBP1 from Human
MSU Annotation: TOPBP1B - Similar to DNA replication protein TOPBP1 from, expressed
Structural Annotation:  

   

LOC_Os08g17294
Gene Name: PSF3
Gene Description: Putative GINS complex subunit
MSU Annotation: PSF3 - Putative GINS complex subunit, expressed
Structural Annotation:  

   

LOC_Os08g36330
Gene Name: POLE2B
Gene Description: Putative DNA polymerase epsilon complex subunit
MSU Annotation: POLE2B - Putative DNA polymerase epsilon complex subunit, expressed
Structural Annotation:  

   

LOC_Os08g43080
Gene Name: POLD4B
Gene Description: Putative DNA polymerase delta complex subunit
MSU Annotation: POLD4B - Putative DNA polymerase delta complex subunit
Structural Annotation:  

   

LOC_Os09g34850
Gene Name: POLD4A
Gene Description: Putative DNA polymerase delta complex subunit
MSU Annotation: POLD4A - Putative DNA polymerase delta complex subunit, expressed
Structural Annotation:  

   

LOC_Os09g36820
Gene Name: MCM10
Gene Description: Putative minichromosome maintenance (MCM) protein 10
MSU Annotation: MCM10 - Putative minichromosome maintenance MCM protein 10, expressed
Structural Annotation:  

   

LOC_Os10g26280
Gene Name: ORC3
Gene Description: Putative origin recognition complex subunit 3
MSU Annotation: ORC3 - Putative origin recognition complex subunit 3, expressed
Structural Annotation:  

   

LOC_Os10g34750
Gene Name: LIG1
Gene Description: Putative DNA ligase I
MSU Annotation: LIG1 - Putative DNA ligase I, expressed
Structural Annotation:  

   

LOC_Os10g34820
Gene Name: CDT1B
Gene Description: Putative DNA replication initiation protein
MSU Annotation: CDT1B - Putative DNA replication initiation protein, expressed
Structural Annotation:  

   

LOC_Os11g03430
Gene Name: CDC45B
Gene Description: Putative DNA replication initiation protein
MSU Annotation: CDC45B - Putative DNA replication initiation protein, expressed
Structural Annotation:  

   

LOC_Os11g05570
Gene Name: RNASEH2A
Gene Description: Putative ribonuclease H2 large subunit
MSU Annotation: RNASEH2A - Putative ribonuclease H2 large subunit, expressed
Structural Annotation:  

   

LOC_Os11g08330
Gene Name: POLD1
Gene Description: Putative DNA polymerase delta catalytic subunit
MSU Annotation: POLD1 - Putative DNA polymerase delta catalytic subunit, expressed
Structural Annotation:  

   

LOC_Os11g08660
Gene Name: TOPBP1A
Gene Description: Similar to DNA replication protein TOPBP1 from Human
MSU Annotation: TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed
Structural Annotation:  

   

LOC_Os11g29380
Gene Name: MCM2
Gene Description: Putative minichromosome maintenance (MCM) complex subunit 2
MSU Annotation: MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed
Structural Annotation:  

   

LOC_Os11g36390
Gene Name: RFC1
Gene Description: Putative clamp loader (of PCNA), replication factor C subunit 1
MSU Annotation: RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed
Structural Annotation:  

   

LOC_Os12g03130
Gene Name: CDC45A
Gene Description: Putative DNA replication initiation protein
MSU Annotation: CDC45A - Putative DNA replication initiation protein, expressed
Structural Annotation:  

   

LOC_Os12g07720
Gene Name: RFC4
Gene Description: Putative clamp loader (of PCNA), replication factor C subunit 4
MSU Annotation: RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed
Structural Annotation:  

   

LOC_Os12g13950
Gene Name: POLA2
Gene Description: Putative DNA polymerase alpha complex subunit
MSU Annotation: POLA2 - Putative DNA polymerase alpha complex subunit, expressed
Structural Annotation:  

   

LOC_Os12g37400
Gene Name: MCM7
Gene Description: Putative minichromosome maintenance (MCM) complex subunit 7
MSU Annotation: MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed
Structural Annotation:  

 

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.