Conserved peptide uORF-containing transcripts

   
Contact: Celine Hayden
Organization: University of Arizona
Source: Hayden CA and Jorgensen RA (2007) Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes. BMC Biology 5:32
Criteria: Contains conserved peptide uORF as determined by Ka/Ks
   

Chr7:25651217..25651324
Gene Name: CPuORF37
Gene Description: conserved peptide uORF-containing transcript
Comment: Identified using AK070250.1
Structural Annotation:  

   

LOC_Os01g43370
Gene Name: CPuORF17
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF17 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK099577.1, AK101393.1, AK101548.1, AK103381.1
Structural Annotation:  

   

LOC_Os01g43680
Gene Name: CPuORF28
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF29 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK071582.1
Structural Annotation:  

   

LOC_Os01g43680
Gene Name: CPuORF29
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF29 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK071582.1
Structural Annotation:  

   

LOC_Os01g50030
Gene Name: CPuORF25
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF25 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK102037.1
Structural Annotation:  

   

LOC_Os02g01240
Gene Name: CPuORF11
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF11 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK103103.1, AK060523.1
Structural Annotation:  

   

LOC_Os02g01360
Gene Name: CPuORF10
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: OsMADS60 - MADS-box family gene with MIKCc type-box, expressed
Comment: Identified using AK060830.1
Structural Annotation:  

   

LOC_Os02g03960
Gene Name: CPuORF1
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF1 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK070887.1
Structural Annotation:  

   

LOC_Os02g15880
Gene Name: CPuORF16
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF16 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK068099.1, AK100409.1
Structural Annotation:  

   

LOC_Os02g21090
Gene Name: CPuORF32
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF33 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK102703.1, AK107002.1, AK106848.1
Structural Annotation:  

   

LOC_Os02g21090
Gene Name: CPuORF33
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF33 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK102703.1, AK107002.1, AK106848.1
Structural Annotation:  

   

LOC_Os02g21920
Gene Name: CPuORF24
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF24 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK060405.1, AK104437.1
Structural Annotation:  

   

LOC_Os02g36590
Gene Name: CPuORF19
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF19 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK105763.1
Structural Annotation:  

   

LOC_Os02g39790
Gene Name: CPuORF9
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF9 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK070259.1, AK062133.1, AK070269.1
Structural Annotation:  

   

LOC_Os02g44230
Gene Name: CPuORF22
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF22 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK103391.1
Structural Annotation:  

   

LOC_Os02g47220
Gene Name: CPuORF20
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF20 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK100056.1, AK101989.1
Structural Annotation:  

   

LOC_Os02g52300
Gene Name: CPuORF38
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF38 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK069088.1
Structural Annotation:  

   

LOC_Os03g19370
Gene Name: CPuORF4
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF4 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK109929.1
Structural Annotation:  

   

LOC_Os03g27390
Gene Name: CPuORF34
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF35 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK065674.1
Structural Annotation:  

   

LOC_Os03g27390
Gene Name: CPuORF35
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF35 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK065674.1
Structural Annotation:  

   

LOC_Os03g39432
Gene Name: CPuORF30
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF31 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK101749.1
Structural Annotation:  

   

LOC_Os03g39432
Gene Name: CPuORF31
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF31 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK101749.1
Structural Annotation:  

   

LOC_Os04g38520
Gene Name: CPuORF18
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF18 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK101398.1
Structural Annotation:  

   

LOC_Os04g42090
Gene Name: CPuORF7
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF7 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK072162.1, AK100589.1, AK067166.1, AK098918.1
Structural Annotation:  

   

LOC_Os04g53190
Gene Name: CPuORF12
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF12 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK064902.1
Structural Annotation:  

   

LOC_Os05g03860
Gene Name: CPuORF3
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF3 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK065180.1, AK105138.1, AK104844.1
Structural Annotation:  

   

LOC_Os05g47540
Gene Name: CPuORF26
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF26 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using BLAST to genome
Structural Annotation:  

   

LOC_Os06g02550
Gene Name: CPuORF21
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF21 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK069526.1
Structural Annotation:  

   

LOC_Os06g48350
Gene Name: CPuORF14
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF14 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using BLAST to genome
Structural Annotation:  

   

LOC_Os08g32080
Gene Name: CPuORF27
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF27 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK101569.1, AK100634.1
Structural Annotation:  

   

LOC_Os09g13570
Gene Name: CPuORF2
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF2 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK064903.1, AK098869.1, AK072360.1
Structural Annotation:  

   

LOC_Os09g15770
Gene Name: CPuORF13
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF13 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK067685.1, AK098857.1
Structural Annotation:  

   

LOC_Os09g25620
Gene Name: CPuORF8
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF8 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK100397.1, AK101535.1, AK102445.1, AK067682.1
Structural Annotation:  

   

LOC_Os09g28354
Gene Name: CPuORF39
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF39 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK061433.1, AK101182.1
Structural Annotation:  

   

LOC_Os10g26140
Gene Name: CPuORF15
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF15 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK072620.1
Structural Annotation:  

   

LOC_Os10g36703
Gene Name: CPuORF40
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF40 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK109491.1, AK068270.1
Structural Annotation:  

   

LOC_Os10g40550
Gene Name: CPuORF23
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF23 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK069361.1
Structural Annotation:  

   

LOC_Os11g02300
Gene Name: CPuORF36
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF36 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK071885.1, AK072172.1, AK071924.1,
Structural Annotation:  

   

LOC_Os12g06330
Gene Name: CPuORF6
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF6 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using AK074015.1
Structural Annotation:  

   

LOC_Os12g37410
Gene Name: CPuORF5
Gene Description: conserved peptide uORF-containing transcript
MSU Annotation: CPuORF5 - conserved peptide uORF-containing transcript, expressed
Comment: Identified using BLAST to genome
Structural Annotation:  

 

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.