Trypsin Family (Peptidase_S1; PF00089)
| Contact: | R. Sowdhamini |
| Organization: | National Centre for Biological Sciences, Bangalore, India |
| Source: | Tripathi LP, Sowdhamini R (2006) Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics. 9;7:200 |
| Criteria: | Contains a SP1 domain |
| Gene Name: | OsDegp1 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp1 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1 |
| Structural Annotation: | |
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| Gene Name: | OsDegp2 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp2 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1, PDZ Predicted localization2: C |
| Structural Annotation: | |
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| Gene Name: | OsDegp3 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp3 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1 Predicted localization2: M |
| Structural Annotation: | |
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| Gene Name: | OsDegp4 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp4 - Putative Deg protease homologue |
| Comment: | Contains the following domain(s)1: SP1 Predicted localization2: M |
| Structural Annotation: | |
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| Gene Name: | OsDegp5 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp5 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1, PDZ Predicted localization2: C |
| Structural Annotation: | |
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| Gene Name: | OsDegp6 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp6 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1 Predicted localization2: C |
| Structural Annotation: | |
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| Gene Name: | OsDegp7 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp7 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1 Predicted localization2: C |
| Structural Annotation: | |
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| Gene Name: | OsDegp8 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp8 - Putative Deg protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing3 Contains the following domain(s)1: SP1 Predicted localization2: C |
| Structural Annotation: | |
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| Gene Name: | OsDegp9 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp9 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1, PDZ Predicted localization2: C |
| Structural Annotation: | |
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| Gene Name: | OsDegp10 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp10 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1 Predicted localization2: C |
| Structural Annotation: | |
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| Gene Name: | OsDegp11 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp11 - Putative Deg protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing3 Contains the following domain(s)1: SP1 Predicted localization2: M |
| Structural Annotation: | |
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| Gene Name: | OsDegp12 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp12 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1, PDZ |
| Structural Annotation: | |
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| Gene Name: | OsDegp13 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp13 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1 |
| Structural Annotation: | |
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| Gene Name: | OsDegp14 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp14 - Putative Deg protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing3 Contains the following domain(s)1: SP1 Predicted localization2: C |
| Structural Annotation: | |
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| Gene Name: | OsDegp15 |
| Gene Description: | Putative Deg protease homologue in rice |
| MSU Annotation: | OsDegp15 - Putative Deg protease homologue, expressed |
| Comment: | Contains the following domain(s)1: SP1, PDZ |
| Structural Annotation: | |
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References: 1SPxx- Serine protease family SPxx domain, where SPxx refers to the serine protease family as per MEROPS classification; PDZ� PDZ domain (Pfam accession: PF00595; PA� Protease associated domain (Pfam accession: PF02225); SN- Subtilisin N-terminal region (Pfam accession: PF005922); D1034- Domain of unknown function (Pfam accession: PF06280); Arf- ADP-ribosylation factor family (Pfam accession: PF00025); C2- C2 domain (Pfam accession: PF00168); zf- Zinc knuckle (Pfam accession: PF00098); rve� Integrase core domain (Pfam accession:PF00665); EX2- Extensin-like region (Pfam accession: PF04554); S9N- Prolyl oligopeptidase, N-terminal beta-propeller domain (Pfam accession: PF02897); PD40- WD40-like beta propeller repeat (Pfam accession: PF07676); DPN- Dipeptidyl peptidase (DPP IV) N-terminal region (Pfam accession: PF00930); Transposase_21- Transposase family tnp2 (Pfam accession: PF02992); Retrotrans- Retrotransposon gag protein (Pfam accession: PF03732); ABC1- ABC1 family (Pfam accession: PF03109); LON- ATP-dependent protease La (LON) domain (Pfam accession: PF02190); AAA- ATPase family associated with various cellular activities (Pfam accession: PF00004); UBA- UBA/TN-S domain (Pfam accession: PF000627) 2 C: chloroplast ; M: mitochondrion S: Secreted. Predictions were made using TargetP (Emanuelsson et al., 2000) 3 Pils and Schultz, (2004); Ross et al.(2003) |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.