Nucleoporin Autopeptidase Family (Peptidase_S59; PF04096)
| Contact: | R. Sowdhamini |
| Organization: | National Centre for Biological Sciences, Bangalore, India |
| Source: | Tripathi LP, Sowdhamini R (2006) Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics. 9;7:200 |
| Criteria: | Contains a SP59 domain |
| Gene Name: | OsNucAP1 |
| Gene Description: | Putative Nucleoporin Autopeptidase homologue in rice |
| MSU Annotation: | OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed |
| Comment: | Contains the following domain(s)1: SP59 |
| Structural Annotation: | |
|
| |
| Gene Name: | OsNucAP2 |
| Gene Description: | Putative Nucleoporin Autopeptidase homologue in rice |
| MSU Annotation: | OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed |
| Comment: | Contains the following domain(s)1: SP59 Predicted localization2: C |
| Structural Annotation: | |
|
| |
| Gene Name: | OsNucAP3 |
| Gene Description: | Putative Nucleoporin Autopeptidase homologue in rice |
| MSU Annotation: | OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed |
| Comment: | Contains the following domain(s)1: SP59 |
| Structural Annotation: | |
|
| |
|
References: 1SPxx- Serine protease family SPxx domain, where SPxx refers to the serine protease family as per MEROPS classification; PDZ� PDZ domain (Pfam accession: PF00595; PA� Protease associated domain (Pfam accession: PF02225); SN- Subtilisin N-terminal region (Pfam accession: PF005922); D1034- Domain of unknown function (Pfam accession: PF06280); Arf- ADP-ribosylation factor family (Pfam accession: PF00025); C2- C2 domain (Pfam accession: PF00168); zf- Zinc knuckle (Pfam accession: PF00098); rve� Integrase core domain (Pfam accession:PF00665); EX2- Extensin-like region (Pfam accession: PF04554); S9N- Prolyl oligopeptidase, N-terminal beta-propeller domain (Pfam accession: PF02897); PD40- WD40-like beta propeller repeat (Pfam accession: PF07676); DPN- Dipeptidyl peptidase (DPP IV) N-terminal region (Pfam accession: PF00930); Transposase_21- Transposase family tnp2 (Pfam accession: PF02992); Retrotrans- Retrotransposon gag protein (Pfam accession: PF03732); ABC1- ABC1 family (Pfam accession: PF03109); LON- ATP-dependent protease La (LON) domain (Pfam accession: PF02190); AAA- ATPase family associated with various cellular activities (Pfam accession: PF00004); UBA- UBA/TN-S domain (Pfam accession: PF000627) 2 C: chloroplast ; M: mitochondrion S: secreted. Predictions were made using TargetP (Emanuelsson et al., 2000) |
|
|
|
|
This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.