Clp Protease Family (Peptidase_S14; PF00574)
| Contact: | R. Sowdhamini |
| Organization: | National Centre for Biological Sciences, Bangalore, India |
| Source: | Tripathi LP, Sowdhamini R (2006) Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics. 9;7:200 |
| Criteria: | Contains a SP14 domain |
| Gene Name: | OsClp1 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp1 - Putative Clp protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing1 Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp2 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp2 - Putative Clp protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing1 Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp3 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp3 - Putative Clp protease homologue, expressed |
| Comment: | Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp4 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp4 - Putative Clp protease homologue, expressed |
| Comment: | Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp5 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp5 - Putative Clp protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing1 Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp6 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp6 - Putative Clp protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing1 Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp7 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp7 - Putative Clp protease homologue, expressed |
| Comment: | Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp8 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp8 - Putative Clp protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing1 Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp9 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp9 - Putative Clp protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing1 Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp10 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp10 - Putative Clp protease homologue, expressed |
| Comment: | Contains the following domain(s)2: SP14 Predicted localization3: M |
| Structural Annotation: | |
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| Gene Name: | OsClp11 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp11 - Putative Clp protease homologue, expressed |
| Comment: | Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp12 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp12 - Putative Clp protease homologue, expressed |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing1 Contains the following domain(s)2: SP14 Predicted localization3: C |
| Structural Annotation: | |
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| Gene Name: | OsClp13 |
| Gene Description: | Putative Clp protease homologue in rice |
| MSU Annotation: | OsClp13 - Putative Clp protease homologue |
| Comment: | Serine Protease Homologue: one or more catalytic residues are either mutated or missing1 Contains the following domain(s)2: SP14 |
| Structural Annotation: | |
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References: 1 Pils and Schultz (2004); Ross et al. (2003) 2SPxx- Serine protease family SPxx domain, where SPxx refers to the serine protease family as per MEROPS classification; PDZ� PDZ domain (Pfam accession: PF00595; PA� Protease associated domain (Pfam accession: PF02225); SN- Subtilisin N-terminal region (Pfam accession: PF005922); D1034- Domain of unknown function (Pfam accession: PF06280); Arf- ADP-ribosylation factor family (Pfam accession: PF00025); C2- C2 domain (Pfam accession: PF00168); zf- Zinc knuckle (Pfam accession: PF00098); rve� Integrase core domain (Pfam accession:PF00665); EX2- Extensin-like region (Pfam accession: PF04554); S9N- Prolyl oligopeptidase, N-terminal beta-propeller domain (Pfam accession: PF02897); PD40- WD40-like beta propeller repeat (Pfam accession: PF07676); DPN- Dipeptidyl peptidase (DPP IV) N-terminal region (Pfam accession: PF00930); Transposase_21- Transposase family tnp2 (Pfam accession: PF02992); Retrotrans- Retrotransposon gag protein (Pfam accession: PF03732); ABC1- ABC1 family (Pfam accession: PF03109); LON- ATP-dependent protease La (LON) domain (Pfam accession: PF02190); AAA- ATPase family associated with various cellular activities (Pfam accession: PF00004); UBA- UBA/TN-S domain (Pfam accession: PF000627) 3 C: chloroplast ; M: mitochondrion S: secreted. Predictions were made using TargetP (Emanuelsson et al., 2000) |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.