Plant thionin family protein precursor
| Superfamily: | Cysteine Rich Peptides |
| Contact: | Kevin Silverstein |
| Organization: | University of Minnesota |
| Source: | Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: | Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
| Gene Name: | THION42 |
| Gene Description: | Plant thionin family protein precursor, putative |
| Comment: | High confidence single exon gene is in a cluster with 4 similar thionin genes with the same gene structure plus four additional paralogs on chromosome 3. Gene predicted by GlimmerHMM. |
| Structural Annotation: | |
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| Gene Name: | THION43 |
| Gene Description: | Plant thionin family protein precursor, putative |
| Comment: | Pseudogene. High confidence single exon pseudogene is in a cluster with 3 similar thionin genes with the same gene structure plus four additional paralogs on chromosome 3. |
| Structural Annotation: | |
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| Gene Name: | THION13 |
| Gene Description: | Plant thionin family protein precursor, putative |
| Comment: | The 5'-end of this gene may not be correct based upon a dozen paralogs nearby, but the last two exons are correct. |
| Structural Annotation: | |
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| Gene Name: | THION18 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION18 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION27 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION27 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION19 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION19 - Plant thionin family protein precursor, putative, expressed |
| Structural Annotation: | |
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| Gene Name: | THION44 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION44 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION20 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION20 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION21 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION21 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION24 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION24 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION25 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION25 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION22 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION22 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION23 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION23 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION26 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION26 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION29 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION29 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION28 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION28 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION36 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION36 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION37 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION37 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION38 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION38 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION39 |
| Gene Description: | Plant thionin family protein precursor |
| MSU Annotation: | THION39 - Plant thionin family protein precursor, expressed |
| Comment: | This is annotated as a single exon gene based on 7 similar paralogs. |
| Structural Annotation: | |
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| Gene Name: | THION30 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION30 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION1 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION1 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION2 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION2 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION3 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION3 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION4 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION5 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION5 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION5 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION6 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION6 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION7 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION7 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION8 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION8 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION9 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION9 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION10 |
| Gene Description: | Plant thionin family protein precursor |
| MSU Annotation: | THION10 - Plant thionin family protein precursor |
| Comment: | Pseudogene. Likely pseudogene based on alignment with close homologs and lack of upstream signal peptide |
| Structural Annotation: | |
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| Gene Name: | THION11 |
| Gene Description: | Plant thionin family protein precursor |
| MSU Annotation: | THION11 - Plant thionin family protein precursor |
| Comment: | Pseudogene. Likely pseudogene based on alignment with close homologs and lack of upstream signal peptide |
| Structural Annotation: | |
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| Gene Name: | THION12 |
| Gene Description: | Plant thionin family protein precursor |
| MSU Annotation: | THION12 - Plant thionin family protein precursor |
| Comment: | The three exon annotation is consistent with gene structure of 12 paralogs, and preserves the crucial internal cysteine triplet. |
| Structural Annotation: | |
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| Gene Name: | THION16 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION16 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION17 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION17 - Plant thionin family protein precursor, putative |
| Comment: | Pseudogene. High-confidence prediction shows evidence of a major internal deletion relative to neighboring paralog, but is more consistent with homologs in other species. |
| Structural Annotation: | |
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| Gene Name: | THION14 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION14 - Plant thionin family protein precursor, putative, expressed |
| Structural Annotation: | |
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| Gene Name: | THION15 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION15 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION33 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION33 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION35 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION35 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | THION32 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION32 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION31 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION31 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION34 |
| Gene Description: | Plant thionin family protein precursor, expressed |
| MSU Annotation: | THION34 - Plant thionin family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | THION40 |
| Gene Description: | Plant thionin family protein precursor |
| MSU Annotation: | THION40 - Plant thionin family protein precursor |
| Comment: | This is annotated as a single exon gene based on 7 similar paralogs. |
| Structural Annotation: | |
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| Gene Name: | THION41 |
| Gene Description: | Plant thionin family protein precursor, putative |
| MSU Annotation: | THION41 - Plant thionin family protein precursor, putative |
| Structural Annotation: | |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.