Rapid Alkalinization Factor (RALF) family protein precursor

   
Superfamily: Cysteine Rich Peptides
Contact: Kevin Silverstein
Organization: University of Minnesota
Source: Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80
Criteria: Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences.
   

Chr11:14884145..14884387
Gene Name: RALFL40
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
Comment: The community annotation is a high confidence prediction is similar to 9 paralogs.
Structural Annotation:  

   

Chr4:16884609..16884890
Gene Name: RALFL33
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
Comment: High confidence prediction is in a cluster with 4 highly similar paralogs and is consistent with GlimmerHMM prediction.
Structural Annotation:  

   

Chr4:18646262..18646559
Gene Name: RALFL38
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
Comment: Pseudogene. The community annotation one-exon gene structure is consistent with 8 nearby paralogs.
Structural Annotation:  

   

Chr6:23781367..23780849
Gene Name: RALFL2
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
Comment: Pseudogene. High-confidence gene prediction
Structural Annotation:  

   

Chr9:13980556..13981017
Gene Name: RALFL3
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
Comment: Pseudogene. High confidence prediction based upon similarity to 4 paralogs.
Structural Annotation:  

   

LOC_Os01g10470
Gene Name: RALFL17
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os01g15320
Gene Name: RALFL9
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os01g25540
Gene Name: RALFL6
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL6 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os01g25560
Gene Name: RALFL7
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL7 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os01g70690
Gene Name: RALFL1
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL1 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os02g44940
Gene Name: RALFL8
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os03g22440
Gene Name: RALFL15
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os04g28720
Gene Name: RALFL32
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL32 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os04g28830
Gene Name: RALFL34
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL34 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os04g28840
Gene Name: RALFL35
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL35 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os04g28850
Gene Name: RALFL36
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os04g31410
Gene Name: RALFL37
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL37 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os04g31430
Gene Name: RALFL30
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL30 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed
Structural Annotation:  

   

LOC_Os04g31460
Gene Name: RALFL39
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL39 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os04g31484
Gene Name: RALFL20
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor
MSU Annotation: RALFL20 - Rapid ALkalinization Factor RALF family protein precursor
Comment: The community annotation has a reviesed translational frame that is highly supported by homologous proteins in other species.
Structural Annotation:  

   

LOC_Os04g31520
Gene Name: RALFL21
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL21 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os04g31550
Gene Name: RALFL22
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL22 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os04g54090
Gene Name: RALFL18
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor
MSU Annotation: RALFL18 - Rapid ALkalinization Factor RALF family protein precursor
Comment: Possible pseudogene based on alignment with close homologs
Structural Annotation:  

   

LOC_Os05g11330
Gene Name: RALFL19
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL19 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os06g29730
Gene Name: RALFL28
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL28 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os07g13310
Gene Name: RALFL10
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL10 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os07g13380
Gene Name: RALFL11
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL11 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os07g13440
Gene Name: RALFL12
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL12 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os07g13450
Gene Name: RALFL13
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL13 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os10g18170
Gene Name: RALFL16
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL16 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os10g41980
Gene Name: RALFL26
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL26 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os10g41999
Gene Name: RALFL27
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL27 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os10g42020
Gene Name: RALFL29
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL29 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os11g26190
Gene Name: RALFL23
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL23 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os11g26340
Gene Name: RALFL24
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL24 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os11g26880
Gene Name: RALFL14
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL14 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g11660
Gene Name: RALFL45
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL45 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g12000
Gene Name: RALFL46
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL46 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g21760
Gene Name: RALFL25
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, putative
MSU Annotation: RALFL25 - Rapid ALkalinization Factor RALF family protein precursor, putative
Structural Annotation:  

   

LOC_Os12g35670
Gene Name: RALFL4
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g35690
Gene Name: RALFL5
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL5 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g38330
Gene Name: RALFL44
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL44 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g38340
Gene Name: RALFL42
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL42 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g38350
Gene Name: RALFL43
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL43 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g38360
Gene Name: RALFL31
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL31 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

   

LOC_Os12g38370
Gene Name: RALFL41
Gene Description: Rapid ALkalinization Factor (RALF) family protein precursor, expressed
MSU Annotation: RALFL41 - Rapid ALkalinization Factor RALF family protein precursor, expressed
Structural Annotation:  

 

NSF Logo UGA Logo GRA Logo

This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.