Prolamin precursor

   
Superfamily: Cysteine Rich Peptides
Contact: Kevin Silverstein
Organization: University of Minnesota
Source: Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80
Criteria: Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences.
   

LOC_Os05g26240
Gene Name: PROLM1
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM1 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26250
Gene Name: PROLM2
Gene Description: Prolamin precursor
MSU Annotation: PROLM3 - Prolamin precursor, putative, expressed
Comment: Pseudogene. Community annotation is a single exon and this structure is consistent with gene structure of 20 paralogs and transcript data.
Structural Annotation:  

   

LOC_Os05g26250
Gene Name: PROLM3
Gene Description: Prolamin precursor, putative, expressed
MSU Annotation: PROLM3 - Prolamin precursor, putative, expressed
Comment: Pseudogene. Community annotation is fully supported by TIGR Rice Transcript Assemblies TA2578_4530 and 8 others plus FL-cDNA RICPROL14A
Structural Annotation:  

   

LOC_Os05g26350
Gene Name: PROLM4
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM4 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26359
Gene Name: PROLM5
Gene Description: Prolamin precursor, putative
MSU Annotation: PROLM6 - Prolamin precursor, putative, expressed
Structural Annotation:  

   

LOC_Os05g26359
Gene Name: PROLM6
Gene Description: Prolamin precursor, putative
MSU Annotation: PROLM6 - Prolamin precursor, putative, expressed
Structural Annotation:  

   

LOC_Os05g26377
Gene Name: PROLM7
Gene Description: Prolamin precursor, putative
MSU Annotation: PROLM9 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26377
Gene Name: PROLM8
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM9 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26377
Gene Name: PROLM9
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM9 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26440
Gene Name: PROLM10
Gene Description: Prolamin precursor, putative
MSU Annotation: PROLM10 - Prolamin precursor, putative
Structural Annotation:  

   

LOC_Os05g26460
Gene Name: PROLM11
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM11 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26480
Gene Name: PROLM12
Gene Description: Prolamin precursor, putative
MSU Annotation: PROLM12 - Prolamin precursor, putative, expressed
Structural Annotation:  

   

LOC_Os05g26490
Gene Name: PROLM13
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM13 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26620
Gene Name: PROLM14
Gene Description: Prolamin precursor, putative
MSU Annotation: PROLM14 - Prolamin precursor, putative, expressed
Structural Annotation:  

   

LOC_Os05g26690
Gene Name: PROLM15
Gene Description: Prolamin precursor, putative
MSU Annotation: PROLM15 - Prolamin precursor, putative, expressed
Structural Annotation:  

   

LOC_Os05g26720
Gene Name: PROLM16
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM16 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26750
Gene Name: PROLM17
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM17 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os05g26770
Gene Name: PROLM18
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM18 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os06g31060
Gene Name: PROLM23
Gene Description: Prolamin precursor
MSU Annotation: PROLM23 - Prolamin precursor, expressed
Comment: Pseudogene. Community annotation is a single exon pseudogene and this structure is consistent with gene structure of 5 paralogs and the transcript evidence.
Structural Annotation:  

   

LOC_Os06g31070
Gene Name: PROLM24
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM24 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os07g10570
Gene Name: PROLM25
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM25 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os07g10580
Gene Name: PROLM26
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM26 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os07g11900
Gene Name: PROLM19
Gene Description: Prolamin precursor, putative
MSU Annotation: PROLM19 - Prolamin precursor, putative, expressed
Structural Annotation:  

   

LOC_Os07g11910
Gene Name: PROLM20
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM20 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os07g11920
Gene Name: PROLM21
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM22 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os07g11920
Gene Name: PROLM22
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM22 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os12g16880
Gene Name: PROLM27
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM27 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os12g16890
Gene Name: PROLM28
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM28 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os12g17010
Gene Name: PROLM29
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM29 - Prolamin precursor, expressed
Structural Annotation:  

   

LOC_Os12g17030
Gene Name: PROLM30
Gene Description: Prolamin precursor, expressed
MSU Annotation: PROLM30 - Prolamin precursor, expressed
Comment: Pseudogene. Community annotation model is supported by a dozen TIGR Rice Transcript assemblies including TA2742_4530 and TA2745_4530.
Structural Annotation:  

 

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.