Ripening-related family protein precursor
| Superfamily: | Cysteine Rich Peptides |
| Contact: | Kevin Silverstein |
| Organization: | University of Minnesota |
| Source: | Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: | Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
| Gene Name: | RIPER5 |
| Gene Description: | Ripening-related family protein precursor, putative |
| Comment: | Pseudogene. Sequence similar to an adjacent cluster of Ripening-related protein encoding genes. |
| Structural Annotation: | |
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| Gene Name: | RIPER1 |
| Gene Description: | Ripening-related family protein precursor, expressed |
| MSU Annotation: | RIPER1 - Ripening-related family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | RIPER2 |
| Gene Description: | Ripening-related family protein precursor, expressed |
| MSU Annotation: | RIPER2 - Ripening-related family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | RIPER3 |
| Gene Description: | Ripening-related family protein precursor, putative |
| MSU Annotation: | RIPER3 - Ripening-related family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | RIPER4 |
| Gene Description: | Ripening-related family protein precursor, putative |
| MSU Annotation: | RIPER4 - Ripening-related family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | RIPER6 |
| Gene Description: | Ripening-related family protein precursor, expressed |
| MSU Annotation: | RIPER6 - Ripening-related family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | RIPER7 |
| Gene Description: | Ripening-related family protein precursor |
| MSU Annotation: | RIPER7 - Ripening-related family protein precursor, expressed |
| Comment: | Pseudogene. The community anntoation is consistent with gene structure of 6 paralogs, and preserves several crucial cysteines that the annotation omits. |
| Structural Annotation: | |
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| Gene Name: | RIPER8 |
| Gene Description: | Ripening-related family protein precursor |
| MSU Annotation: | RIPER8 - Ripening-related family protein precursor |
| Comment: | Pseudogene. Commununity annotation is a single exon and this is consistent with gene structure of 6 paralogs, and preserves several crucial cysteines that the annotation omits. |
| Structural Annotation: | |
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| Gene Name: | RIPER9 |
| Gene Description: | Ripening-related family protein precursor, putative |
| MSU Annotation: | RIPER9 - Ripening-related family protein precursor, putative |
| Structural Annotation: | |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.