Root cap and Late embryogenesis related protein family
| Superfamily: | Cysteine Rich Peptides |
| Contact: | Kevin Silverstein |
| Organization: | University of Minnesota |
| Source: | Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: | Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
| Gene Name: | RCLEA1 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor, putative, expressed |
| Comment: | Pseudogene. This annotation is supported by TIGR Rice Transcript Assembly TA19150_4530 and FL-cDNA AK061137 |
| Structural Annotation: | |
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| Gene Name: | RCLEA2 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor, putative |
| MSU Annotation: | RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed |
| Structural Annotation: | |
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| Gene Name: | RCLEA3 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor, putative |
| MSU Annotation: | RCLEA3 - Root cap and Late embryogenesis related family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | RCLEA4 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor, expressed |
| MSU Annotation: | RCLEA4 - Root cap and Late embryogenesis related family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | RCLEA5 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor, expressed |
| MSU Annotation: | RCLEA5 - Root cap and Late embryogenesis related family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | RCLEA6 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor, expressed |
| MSU Annotation: | RCLEA6 - Root cap and Late embryogenesis related family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | RCLEA7 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor, expressed |
| MSU Annotation: | RCLEA7 - Root cap and Late embryogenesis related family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | RCLEA8 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor |
| MSU Annotation: | RCLEA8 - Root cap and Late embryogenesis related family protein precursor |
| Comment: | This annotation has altered the donor exon by 7 bp. This is consistent with paralog structure and preserves the crucial cysteine arrangement that the annotation omits. |
| Structural Annotation: | |
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| Gene Name: | RCLEA9 |
| Gene Description: | Root cap and Late embryogenesis related family protein precursor, putative |
| MSU Annotation: | RCLEA9 - Root cap and Late embryogenesis related family protein precursor, putative |
| Structural Annotation: | |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.