Glycine and cysteine rich family protein precurson
| Superfamily: | Cysteine Rich Peptides |
| Contact: | Kevin Silverstein |
| Organization: | University of Minnesota |
| Source: | Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: | Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
| Gene Name: | GCRP11 |
| Gene Description: | Glycine and cysteine rich family protein precursor, putative |
| Comment: | Pseudogene. One exon aligns well with paralogs, but couldn't find the other 3 exons. |
| Structural Annotation: | |
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| Gene Name: | GCRP12 |
| Gene Description: | Glycine and cysteine rich family protein precursor, putative |
| Comment: | Pseudogene. One exon aligns well with paralogs, but couldn't find the other 3 exons. |
| Structural Annotation: | |
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| Gene Name: | GCRP13 |
| Gene Description: | Glycine and cysteine rich family protein precursor, putative |
| Comment: | Pseudogene. One exon aligns well with paralogs, but couldn't find the other 3 exons. |
| Structural Annotation: | |
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| Gene Name: | GCRP6 |
| Gene Description: | Glycine and cysteine rich family protein precursor, putative |
| MSU Annotation: | GCRP6 - Glycine and cysteine rich family protein precursor, putative, expressed |
| Structural Annotation: | |
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| Gene Name: | GCRP7 |
| Gene Description: | Glycine and cysteine rich family protein precursor, expressed |
| MSU Annotation: | GCRP7 - Glycine and cysteine rich family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | GCRP8 |
| Gene Description: | Glycine and cysteine rich family protein precursor, putative |
| MSU Annotation: | GCRP8 - Glycine and cysteine rich family protein precursor, putative |
| Structural Annotation: | |
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| Gene Name: | GCRP4 |
| Gene Description: | Glycine and cysteine rich family protein precursor, expressed |
| MSU Annotation: | GCRP4 - Glycine and cysteine rich family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | GCRP1 |
| Gene Description: | Glycine and cysteine rich family protein precursor, putative |
| MSU Annotation: | GCRP1 - Glycine and cysteine rich family protein precursor, putative |
| Comment: | Pseudogene. The CA structural annotation has near identity with an intact paralog on chromosome 1. |
| Structural Annotation: | |
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| Gene Name: | GCRP9 |
| Gene Description: | Glycine and cysteine rich family protein precursor, expressed |
| MSU Annotation: | GCRP9 - Glycine and cysteine rich family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | GCRP10 |
| Gene Description: | Glycine and cysteine rich family protein precursor, expressed |
| MSU Annotation: | GCRP10 - Glycine and cysteine rich family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | GCRP2 |
| Gene Description: | Glycine and cysteine rich family protein precursor, putative |
| MSU Annotation: | GCRP2 - Glycine and cysteine rich family protein precursor, putative, expressed |
| Structural Annotation: | |
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| Gene Name: | GCRP3 |
| Gene Description: | Glycine and cysteine rich family protein precursor, expressed |
| MSU Annotation: | GCRP3 - Glycine and cysteine rich family protein precursor, expressed |
| Structural Annotation: | |
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| Gene Name: | GCRP14 |
| Gene Description: | Glycine and cysteine rich family protein precursor, putative |
| MSU Annotation: | GCRP14 - Glycine and cysteine rich family protein precursor, putative, expressed |
| Comment: | Pseudogene. partial psuedogene is on opposite strand of annotated hypothetical gene. |
| Structural Annotation: | |
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| Gene Name: | GCRP5 |
| Gene Description: | Glycine and cysteine rich family protein precursor, expressed |
| MSU Annotation: | GCRP5 - Glycine and cysteine rich family protein precursor, expressed |
| Structural Annotation: | |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.