Rice HKT transporters
| Contact: | Olivier Cotsaftis |
| Organization: | Australian Centre for Plant Functional Genomics (ACPFG) and University of Adelaide |
| Source: | Platten JD, Cotsaftis O, Berthomieu P, Bohnert H, Davenport RJ, Fairbairn, DJ, Horie T, Leigh RA, Lin HX, Luan S, Maser P, Pantoja O, Rodriguez-Navarro A, Schachtman DP, Schroeder JI, Sentenac H, Uozumi N, Very AA, Zhu JK, Dennis ES, Tester M. (2006) Nomenclature for HKT transporters, key determinants of plant salinity tolerance. Trends Plant Sci. 11(8):372-4 |
| Criteria: | Phylogenetic analysis of the HKT family of Na+ and K+/Na+ in higher plants. Note that one member of the family, OsHKT2;2, which was discovered in the Pokkali cultivar (indica) is absent from the Nipponbare genome and is not displayed here. |
| Gene Name: | OsHKT1;2 |
| Alternate Gene Name: | HKT5 |
| Gene Description: | Na+ transporter |
| GenBank Genomic Acc: | AJ506745 |
| Comment: | Q-PCR forward primer: 5'-ACATCACAGCATCTGCCATT-3' Q-PCR reverse primer: 5'-AGAAACAGCGTCTGAAGAAACA-3' |
| Structural Annotation: | |
|
| |
| Gene Name: | OsHKT1;5 |
| Alternate Gene Name: | HKT8; SKC1 |
| Gene Description: | Na+ transporter |
| MSU Annotation: | OsHKT1;5 - Na+ transporter, expressed |
| GenBank Genomic Acc: | AP003567 |
| Mutant Line/Info: | Postech D09425 |
| Comment: | AK108663 BAB93392 Q-PCR forward primer: 5'-ACGACCCCATCAACTACAGCGTCC-3' Q-PCR reverse primer: 5'-ACGACCCCATCAACTACAGCGTCC-3' |
| Structural Annotation: | |
|
| |
| Gene Name: | OsHKT2;3 |
| Alternate Gene Name: | HKT3 |
| Gene Description: | Na+ transporter |
| MSU Annotation: | OsHKT2;3 - Na+ transporter, expressed |
| GenBank Genomic Acc: | AJ491819 |
| Mutant Line/Info: | Tos17 ND3058 (FST: AG213420) |
| Comment: | AJ491820 CAD37187 Q-PCR forward primer: 5'-GSCTTCAACACCACAGTGATAATG-3' Q-PCR reverse primer: 5'-GTAGCCAGTGGACAACCCAATG-3' (same as for OsHKT2;4) |
| Structural Annotation: | |
|
| |
| Gene Name: | OsHKT1;3 |
| Alternate Gene Name: | HKT6 |
| Gene Description: | Na+ transporter |
| MSU Annotation: | OsHKT1;3 - Na+ transporter, expressed |
| GenBank Genomic Acc: | AJ491817 |
| Comment: | AJ491818 CAD37185 Q-PCR forward primer: 5'-GCTTACTTTGCCCTGATCTCCT-3' Q-PCR reverse primer: 5'-TGAATACCTCACCACCAATC-3' |
| Structural Annotation: | |
|
| |
| Gene Name: | OsHKT1;1 |
| Alternate Gene Name: | HKT4 |
| Gene Description: | Na+ transporter |
| MSU Annotation: | OsHKT1;1 - Na+ transporter, expressed |
| GenBank Genomic Acc: | AJ491815 |
| Mutant Line/Info: | Tos17 ND8018 (FST: AG207416) |
| Comment: | AJ491816 CAD37183 Q-PCR primer forward: 5'-GAGCACTGTGGAGGAATTTTACCG -3' Q-PCR primer reverse: 5'-TAGTGAGTAGCCTACATTGCCGAAA-3' |
| Structural Annotation: | |
|
| |
| Gene Name: | OsHKT1;4 |
| Alternate Gene Name: | HKT7 |
| Gene Description: | Na+ transporter |
| MSU Annotation: | OsHKT1;4 - Na+ transporter, expressed |
| GenBank Genomic Acc: | AJ491853 |
| Comment: | AJ491818 CAD37197 Q-PCR forward primer: 5'-GCGACTCTGGCAAACTGATA-3' Q-PCR reverse primer: 5'-GGTTCCTGTCTATGTGAAAATGAATA-3' |
| Structural Annotation: | |
|
| |
| Gene Name: | OsHKT2;4 |
| Alternate Gene Name: | HKT9 |
| Gene Description: | Na+ transporter |
| MSU Annotation: | OsHKT2;4 - Na+ transporter |
| GenBank Genomic Acc: | AJ491854 |
| Mutant Line/Info: | Tos17 NE7041 (FST: AG209602) |
| Comment: | AJ491855 CAD37199 Q-PCR forward primer: 5'-GSCTTCAACACCACAGTGATAATG-3' Q-PCR reverse primer: 5'-GTAGCCAGTGGACAACCCAATG-3' (same as for OsHKT2;3) |
| Structural Annotation: | |
|
| |
| Gene Name: | OsHKT2;1 |
| Alternate Gene Name: | HKT1 |
| Gene Description: | Na+ transporter |
| MSU Annotation: | OsHKT2;1 - Na+ transporter, expressed |
| GenBank Genomic Acc: | AJ491852 |
| Mutant Line/Info: | Tos17 NC2534 (FST: AG205615) |
| Comment: | AB061311 BAB61789 Q-PCR forward primer: 5'-GTTAATTTTGTTGTTCTAGC-3' Q-PCR reverse primer: 5'-ATGAGGCTGGAAAGTGTCAG-3' |
| Structural Annotation: | |
|
| |
|
|
|
This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.