F-Box and WD40-Repeats Containing Proteins

   
Superfamily: F-box proteins
Contact: Jitendra Khurana
Organization: University of Delhi
Website: http://genomeindia.org/DPMB/index.htm
Source: Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiology 143(4):1467-83
Criteria: BLAST search using the Hidden Markov Model (HMM) profile of F-box domain (PF00646) followed by domain analysis using SMART and PFam with an E-value cut off of less than 1.0. The identified 687 proteins were further classified into 10 subfamilies based upon their domain organization as indicated by the subfamily name.
   

LOC_Os04g52870

Gene Name: OsFBW1
Gene Description: F-box domain and WD40 repeat containing protein
MSU Annotation: OsFBW1 - F-box domain and WD40 repeat containing protein, expressed
GenBank Genomic Acc: AL662970
Structural Annotation:  

   

LOC_Os11g07970

Gene Name: OsFBW2
Gene Description: F-box domain and WD40 repeat containing protein
MSU Annotation: OsFBW2 - F-box domain and WD40 repeat containing protein, expressed
GenBank Genomic Acc: AC135794
Structural Annotation:  

 

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.