F-Box and F-Box-Associated-Domain Containing Proteins
| Superfamily: | F-box proteins |
| Contact: | Jitendra Khurana |
| Organization: | University of Delhi |
| Website: | http://genomeindia.org/DPMB/index.htm |
| Source: | Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiology 143(4):1467-83 |
| Criteria: | BLAST search using the Hidden Markov Model (HMM) profile of F-box domain (PF00646) followed by domain analysis using SMART and PFam with an E-value cut off of less than 1.0. The identified 687 proteins were further classified into 10 subfamilies based upon their domain organization as indicated by the subfamily name. |
| Gene Name: | OsFBA1 |
| Gene Description: | F-box and FBA domain containing protein |
| MSU Annotation: | OsFBA1 - F-box and FBA domain containing protein, expressed |
| GenBank Genomic Acc: | AP004812 |
| Structural Annotation: | |
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| Gene Name: | OsFBA2 |
| Gene Description: | F-box and FBA domain containing protein |
| MSU Annotation: | OsFBA2 - F-box and FBA domain containing protein, expressed |
| GenBank Genomic Acc: | AP004379 |
| Structural Annotation: | |
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| Gene Name: | OsFBA3 |
| Gene Description: | F-box and FBA domain containing protein |
| MSU Annotation: | OsFBA3 - F-box and FBA domain containing protein, expressed |
| GenBank Genomic Acc: | AP005575 |
| Structural Annotation: | |
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| Gene Name: | OsFBA4 |
| Gene Description: | F-box and FBA domain containing protein |
| MSU Annotation: | OsFBA4 - F-box and FBA domain containing protein, expressed |
| GenBank Genomic Acc: | AL845345 |
| Structural Annotation: | |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.