F-box, Leucine-Rich-Repeats and Fibrin-Binding Domain Containing Proteins

   
Superfamily: F-box proteins
Contact: Jitendra Khurana
Organization: University of Delhi
Website: http://genomeindia.org/DPMB/index.htm
Source: Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiology 143(4):1467-83
Criteria: BLAST search using the Hidden Markov Model (HMM) profile of F-box domain (PF00646) followed by domain analysis using SMART and PFam with an E-value cut off of less than 1.0. The identified 687 proteins were further classified into 10 subfamilies based upon their domain organization as indicated by the subfamily name.
   

LOC_Os02g06520

Gene Name: OsFBLD1
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed
GenBank Genomic Acc: AP004843
Structural Annotation:  

   

LOC_Os04g33400

Gene Name: OsFBLD2
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD2 - F-box, LRR and FBD domain containing protein, expressed
GenBank Genomic Acc: AL731641
Structural Annotation:  

   

LOC_Os07g06900

Gene Name: OsFBLD3
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD3 - F-box, LRR and FBD domain containing protein
GenBank Genomic Acc: AP004664
Structural Annotation:  

   

LOC_Os07g13900

Gene Name: OsFBLD4
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD4 - F-box, LRR and FBD domain containing protein
GenBank Genomic Acc: AP004382
Structural Annotation:  

   

LOC_Os07g18510

Gene Name: OsFBLD5
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed
GenBank Genomic Acc: AP005106
Structural Annotation:  

   

LOC_Os07g18560

Gene Name: OsFBLD6
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed
GenBank Genomic Acc: AP005106
Structural Annotation:  

   

LOC_Os07g18610

Gene Name: OsFBLD7
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD7 - F-box, LRR and FBD domain containing protein, expressed
GenBank Genomic Acc: AP005106
Structural Annotation:  

   

LOC_Os07g18710

Gene Name: OsFBLD8
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD8 - F-box, LRR and FBD domain containing protein, expressed
GenBank Genomic Acc: AP004268
Structural Annotation:  

   

LOC_Os09g27090

Gene Name: OsFBLD9
Gene Description: F-box, LRR and FBD domain containing protein
MSU Annotation: OsFBLD9 - F-box, LRR and FBD domain containing protein
GenBank Genomic Acc: AP005419
Structural Annotation:  

 

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.