F-box and Kelch Repeats Containing Proteins

   
Superfamily: F-box proteins
Contact: Jitendra Khurana
Organization: University of Delhi
Website: http://genomeindia.org/DPMB/index.htm
Source: Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiology 143(4):1467-83
Criteria: BLAST search using the Hidden Markov Model (HMM) profile of F-box domain (PF00646) followed by domain analysis using SMART and PFam with an E-value cut off of less than 1.0. The identified 687 proteins were further classified into 10 subfamilies based upon their domain organization as indicated by the subfamily name.
   

LOC_Os01g47050
Gene Name: OsFBK1
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK1 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP003291
Structural Annotation:  

   

LOC_Os02g02350
Gene Name: OsFBK2
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK2 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP004090
Structural Annotation:  

   

LOC_Os02g10850
Gene Name: OsFBK3
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK3 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP004045
Structural Annotation:  

   

LOC_Os02g11790
Gene Name: OsFBK4
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK4 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP003974
Structural Annotation:  

   

LOC_Os02g15950
Gene Name: OsFBK5
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK5 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP005803
Structural Annotation:  

   

LOC_Os02g21110
Gene Name: OsFBK6
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK6 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP004798
Structural Annotation:  

   

LOC_Os02g30210
Gene Name: OsFBK7
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK7 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP005285
Structural Annotation:  

   

LOC_Os02g35530
Gene Name: OsFBK8
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK8 - F-box domain and kelch repeat containing protein
GenBank Genomic Acc: AP004144
Structural Annotation:  

   

LOC_Os02g36520
Gene Name: OsFBK9
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK9 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP005116
Structural Annotation:  

   

LOC_Os02g51350
Gene Name: OsFBK10
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK10 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP005848
Structural Annotation:  

   

LOC_Os03g07160
Gene Name: OsFBK11
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK11 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AC073556
Structural Annotation:  

   

LOC_Os03g07530
Gene Name: OsFBK12
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK12 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AC144491
Structural Annotation:  

   

LOC_Os03g30160
Gene Name: OsFBK13
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK13 - F-box domain and kelch repeat containing protein
GenBank Genomic Acc: AC120538
Structural Annotation:  

   

LOC_Os04g31120
Gene Name: OsFBK14
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK14 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AL607000
Structural Annotation:  

   

LOC_Os04g52830
Gene Name: OsFBK15
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK15 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AL662970
Structural Annotation:  

   

LOC_Os06g39370
Gene Name: OsFBK16
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK16 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP003617
Structural Annotation:  

   

LOC_Os06g44500
Gene Name: OsFBK17
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK17 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP003579
Structural Annotation:  

   

LOC_Os07g05880
Gene Name: OsFBK18
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK18 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP005632
Structural Annotation:  

   

LOC_Os07g47650
Gene Name: OsFBK19
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK19 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AP004300
Structural Annotation:  

   

LOC_Os09g38300
Gene Name: OsFBK20
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK20 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AC137593
Structural Annotation:  

   

LOC_Os10g21930
Gene Name: OsFBK21
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK21 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AC092548
Structural Annotation:  

   

LOC_Os10g24900
Gene Name: OsFBK22
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK22 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AC078839
Structural Annotation:  

   

LOC_Os10g26990
Gene Name: OsFBK23
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK23 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AC027659
Structural Annotation:  

   

LOC_Os11g04330
Gene Name: OsFBK24
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK24 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AC123527
Structural Annotation:  

   

LOC_Os11g14140
Gene Name: OsFBK25
Gene Description: F-box domain and kelch repeat containing protein
MSU Annotation: OsFBK25 - F-box domain and kelch repeat containing protein, expressed
GenBank Genomic Acc: AC135459
Structural Annotation:  

 

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.