F-Box and Leucine-Rich-Repeats Containing Proteins

   
Superfamily: F-box proteins
Contact: Jitendra Khurana
Organization: University of Delhi
Website: http://genomeindia.org/DPMB/index.htm
Source: Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiology 143(4):1467-83
Criteria: BLAST search using the Hidden Markov Model (HMM) profile of F-box domain (PF00646) followed by domain analysis using SMART and PFam with an E-value cut off of less than 1.0. The identified 687 proteins were further classified into 10 subfamilies based upon their domain organization as indicated by the subfamily name.
   

LOC_Os01g41340
Gene Name: OsFBL1
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL1 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP003333
Structural Annotation:  

   

LOC_Os01g41530
Gene Name: OsFBL2
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL2 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP003504
Structural Annotation:  

   

LOC_Os01g57920
Gene Name: OsFBL3
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL3 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP003345
Structural Annotation:  

   

LOC_Os01g63420
Gene Name: OsFBL4
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL4 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP003279
Structural Annotation:  

   

LOC_Os01g64030
Gene Name: OsFBL5
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL5 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP003794
Structural Annotation:  

   

LOC_Os02g01550
Gene Name: OsFBL6
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL6 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004851
Structural Annotation:  

   

LOC_Os02g10700
Gene Name: OsFBL7
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL7 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004869
Structural Annotation:  

   

LOC_Os02g21260
Gene Name: OsFBL8
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL8 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004798
Structural Annotation:  

   

LOC_Os02g33400
Gene Name: OsFBL9
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL9 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004753
Structural Annotation:  

   

LOC_Os03g04270
Gene Name: OsFBL10
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL10 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC099399
Structural Annotation:  

   

LOC_Os04g19750
Gene Name: OsFBL11
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL11 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL731611
Structural Annotation:  

   

LOC_Os04g19810
Gene Name: OsFBL12
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL12 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL731611
Structural Annotation:  

   

LOC_Os04g19920
Gene Name: OsFBL13
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL13 - F-box domain and LRR containing protein
GenBank Genomic Acc: AL731637
Structural Annotation:  

   

LOC_Os04g30200
Gene Name: OsFBL14
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL14 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL731632
Structural Annotation:  

   

LOC_Os04g30210
Gene Name: OsFBL15
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL15 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL731632
Structural Annotation:  

   

LOC_Os04g32460
Gene Name: OsFBL16
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL16 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL606621
Structural Annotation:  

   

LOC_Os04g35970
Gene Name: OsFBL17
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL17 - F-box domain and LRR containing protein
GenBank Genomic Acc: AL606452
Structural Annotation:  

   

LOC_Os04g40800
Gene Name: OsFBL18
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL18 - F-box domain and LRR containing protein
GenBank Genomic Acc: AL606623
Structural Annotation:  

   

LOC_Os04g42670
Gene Name: OsFBL19
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL19 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL731638
Structural Annotation:  

   

LOC_Os04g53510
Gene Name: OsFBL20
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL20 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL606669
Structural Annotation:  

   

LOC_Os05g05800
Gene Name: OsFBL21
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL21 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC084218
Structural Annotation:  

   

LOC_Os05g35110
Gene Name: OsFBL22
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL22 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC109595, AC135419
Structural Annotation:  

   

LOC_Os05g37690
Gene Name: OsFBL23
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL23 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC130602
Structural Annotation:  

   

LOC_Os05g39300
Gene Name: OsFBL24
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL24 - F-box domain and LRR containing protein
GenBank Genomic Acc: AC112159
Structural Annotation:  

   

LOC_Os05g45870
Gene Name: OsFBL25
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL25 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC097111
Structural Annotation:  

   

LOC_Os05g49980
Gene Name: OsFBL26
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL26 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC098832
Structural Annotation:  

   

LOC_Os06g06050
Gene Name: OsFBL27
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL27 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP006533
Structural Annotation:  

   

LOC_Os06g07000
Gene Name: OsFBL28
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL28 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP002536
Structural Annotation:  

   

LOC_Os06g10300
Gene Name: OsFBL29
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL29 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP005652
Structural Annotation:  

   

LOC_Os06g40360
Gene Name: OsFBL30
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL30 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP003629
Structural Annotation:  

   

LOC_Os06g50280
Gene Name: OsFBL31
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL31 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP003614
Structural Annotation:  

   

LOC_Os07g02770
Gene Name: OsFBL32
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL32 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP003810
Structural Annotation:  

   

LOC_Os07g02910
Gene Name: OsFBL33
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL33 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004262
Structural Annotation:  

   

LOC_Os07g06500
Gene Name: OsFBL34
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL34 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP005454
Structural Annotation:  

   

LOC_Os07g06670
Gene Name: OsFBL35
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL35 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP003847
Structural Annotation:  

   

LOC_Os07g17460
Gene Name: OsFBL36
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL36 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP005475
Structural Annotation:  

   

LOC_Os07g18600
Gene Name: OsFBL37
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL37 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP005106
Structural Annotation:  

   

LOC_Os07g31680
Gene Name: OsFBL38
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL38 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP005177
Structural Annotation:  

   

LOC_Os07g36900
Gene Name: OsFBL39
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL39 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP004261
Structural Annotation:  

   

LOC_Os08g05460
Gene Name: OsFBL40
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL40 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP004461
Structural Annotation:  

   

LOC_Os08g09450
Gene Name: OsFBL41
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL41 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP005441
Structural Annotation:  

   

LOC_Os08g09590
Gene Name: OsFBL42
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL42 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP004746
Structural Annotation:  

   

LOC_Os08g09640
Gene Name: OsFBL43
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL43 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP004746
Structural Annotation:  

   

LOC_Os08g09750
Gene Name: OsFBL44
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL44 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004746
Structural Annotation:  

   

LOC_Os08g16840
Gene Name: OsFBL45
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL45 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004650
Structural Annotation:  

   

LOC_Os08g23960
Gene Name: OsFBL46
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL46 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004759
Structural Annotation:  

   

LOC_Os08g24140
Gene Name: OsFBL47
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL47 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP004652
Structural Annotation:  

   

LOC_Os08g35870
Gene Name: OsFBL48
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL48 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004707
Structural Annotation:  

   

LOC_Os08g35900
Gene Name: OsFBL49
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL49 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004707
Structural Annotation:  

   

LOC_Os08g35930
Gene Name: OsFBL50
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL50 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AP004707
Structural Annotation:  

   

LOC_Os08g36000
Gene Name: OsFBL51
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL51 - F-box domain and LRR containing protein
GenBank Genomic Acc: AP005405
Structural Annotation:  

   

LOC_Os10g25680
Gene Name: OsFBL52
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL52 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC122144
Structural Annotation:  

   

LOC_Os11g09580
Gene Name: OsFBL53
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL53 - F-box domain and LRR containing protein
GenBank Genomic Acc: AC145323
Structural Annotation:  

   

LOC_Os11g12480
Gene Name: OsFBL54
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL54 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC136971
Structural Annotation:  

   

LOC_Os11g31620
Gene Name: OsFBL55
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL55 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AC133710
Structural Annotation:  

   

LOC_Os11g33180
Gene Name: OsFBL56
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL56 - F-box domain and LRR containing protein
GenBank Genomic Acc: AC134925
Structural Annotation:  

   

LOC_Os11g33210
Gene Name: OsFBL57
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL57 - F-box domain and LRR containing protein
GenBank Genomic Acc: AC134925
Structural Annotation:  

   

LOC_Os11g42310
Gene Name: OsFBL58
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL58 - F-box domain and LRR containing protein
GenBank Genomic Acc: AC113249
Structural Annotation:  

   

LOC_Os12g33210
Gene Name: OsFBL59
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL59 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL731737
Structural Annotation:  

   

LOC_Os12g33230
Gene Name: OsFBL60
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL60 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL713944
Structural Annotation:  

   

LOC_Os12g34220
Gene Name: OsFBL61
Gene Description: F-box domain and LRR containing protein
MSU Annotation: OsFBL61 - F-box domain and LRR containing protein, expressed
GenBank Genomic Acc: AL732377
Structural Annotation:  

 

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.