F-Box and Domain of Unknown Function Containing Proteins

   
Superfamily: F-box proteins
Contact: Jitendra Khurana
Organization: University of Delhi
Website: http://genomeindia.org/DPMB/index.htm
Source: Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiology 143(4):1467-83
Criteria: BLAST search using the Hidden Markov Model (HMM) profile of F-box domain (PF00646) followed by domain analysis using SMART and PFam with an E-value cut off of less than 1.0. The identified 687 proteins were further classified into 10 subfamilies based upon their domain organization as indicated by the subfamily name.
   

LOC_Os01g08830
Gene Name: OsFBDUF1
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF1 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP002484
Structural Annotation:  

   

LOC_Os01g22400
Gene Name: OsFBDUF2
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF2 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP002971
Structural Annotation:  

   

LOC_Os01g22430
Gene Name: OsFBDUF3
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF3 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP002971
Structural Annotation:  

   

LOC_Os01g22480
Gene Name: OsFBDUF4
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF4 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP002971
Structural Annotation:  

   

LOC_Os01g48250
Gene Name: OsFBDUF5
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF5 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003223
Structural Annotation:  

   

LOC_Os01g56710
Gene Name: OsFBDUF6
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF6 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP003265
Structural Annotation:  

   

LOC_Os01g56740
Gene Name: OsFBDUF7
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF7 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003265
Structural Annotation:  

   

LOC_Os01g56750
Gene Name: OsFBDUF8
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF8 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003265
Structural Annotation:  

   

LOC_Os01g71430
Gene Name: OsFBDUF9
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF9 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP004031
Structural Annotation:  

   

LOC_Os01g71440
Gene Name: OsFBDUF10
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF10 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP004031
Structural Annotation:  

   

LOC_Os01g71460
Gene Name: OsFBDUF11
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF11 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP004031
Structural Annotation:  

   

LOC_Os02g03660
Gene Name: OsFBDUF12
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF12 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP004886
Structural Annotation:  

   

LOC_Os02g44990
Gene Name: OsFBDUF13
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF13 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP005055
Structural Annotation:  

   

LOC_Os02g54330
Gene Name: OsFBDUF14
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF14 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP004849
Structural Annotation:  

   

LOC_Os03g40370
Gene Name: OsFBDUF15
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF15 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC092778
Structural Annotation:  

   

LOC_Os03g50050
Gene Name: OsFBDUF16
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF16 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC087797
Structural Annotation:  

   

LOC_Os03g51090
Gene Name: OsFBDUF17
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF17 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC147426
Structural Annotation:  

   

LOC_Os03g58764
Gene Name: OsFBDUF18
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF18 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC108906
Structural Annotation:  

   

LOC_Os03g63850
Gene Name: OsFBDUF19
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF19 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC128647
Structural Annotation:  

   

LOC_Os04g25140
Gene Name: OsFBDUF20
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF20 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AL606599
Structural Annotation:  

   

LOC_Os04g26240
Gene Name: OsFBDUF21
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF21 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AL662972
Structural Annotation:  

   

LOC_Os04g39660
Gene Name: OsFBDUF22
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF22 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AL606447
Structural Annotation:  

   

LOC_Os05g03210
Gene Name: OsFBDUF23
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF23 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC093089, AC079021
Structural Annotation:  

   

LOC_Os05g18660
Gene Name: OsFBDUF24
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF24 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC136522
Structural Annotation:  

   

LOC_Os05g40610
Gene Name: OsFBDUF25
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF25 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC118289
Structural Annotation:  

   

LOC_Os05g46050
Gene Name: OsFBDUF26
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF26 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC119291
Structural Annotation:  

   

LOC_Os05g46060
Gene Name: OsFBDUF27
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF27 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC119291
Structural Annotation:  

   

LOC_Os05g46150
Gene Name: OsFBDUF28
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF28 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC119291
Structural Annotation:  

   

LOC_Os05g46160
Gene Name: OsFBDUF29
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF29 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC119291
Structural Annotation:  

   

LOC_Os06g05580
Gene Name: OsFBDUF30
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF30 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003632
Structural Annotation:  

   

LOC_Os06g05600
Gene Name: OsFBDUF31
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF31 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003632
Structural Annotation:  

   

LOC_Os06g05610
Gene Name: OsFBDUF32
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF32 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003632
Structural Annotation:  

   

LOC_Os06g05620
Gene Name: OsFBDUF33
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF33 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003632
Structural Annotation:  

   

LOC_Os06g44920
Gene Name: OsFBDUF34
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF34 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP005760
Structural Annotation:  

   

LOC_Os06g49340
Gene Name: OsFBDUF35
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF35 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003761
Structural Annotation:  

   

LOC_Os07g23890
Gene Name: OsFBDUF36
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF36 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP005831
Structural Annotation:  

   

LOC_Os07g25800
Gene Name: OsFBDUF37
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF37 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP005451
Structural Annotation:  

   

LOC_Os07g33400
Gene Name: OsFBDUF38
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF38 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP005103
Structural Annotation:  

   

LOC_Os07g48940
Gene Name: OsFBDUF39
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF39 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP003816
Structural Annotation:  

   

LOC_Os08g03300
Gene Name: OsFBDUF40
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF40 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003886
Structural Annotation:  

   

LOC_Os08g03320
Gene Name: OsFBDUF41
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF41 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP003886
Structural Annotation:  

   

LOC_Os08g06710
Gene Name: OsFBDUF42
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF42 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP005847
Structural Annotation:  

   

LOC_Os08g06780
Gene Name: OsFBDUF43
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF43 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP005605
Structural Annotation:  

   

LOC_Os08g24830
Gene Name: OsFBDUF44
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF44 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP004621
Structural Annotation:  

   

LOC_Os08g33010
Gene Name: OsFBDUF45
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF45 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP004463
Structural Annotation:  

   

LOC_Os08g34890
Gene Name: OsFBDUF46
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF46 - F-box and DUF domain containing protein
GenBank Genomic Acc: AP003798
Structural Annotation:  

   

LOC_Os09g37590
Gene Name: OsFBDUF47
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF47 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AP005862
Structural Annotation:  

   

LOC_Os10g37540
Gene Name: OsFBDUF48
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF48 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC051634
Structural Annotation:  

   

LOC_Os10g37570
Gene Name: OsFBDUF49
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF49 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC051634
Structural Annotation:  

   

LOC_Os11g36350
Gene Name: OsFBDUF50
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF50 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC136149
Structural Annotation:  

   

LOC_Os11g36610
Gene Name: OsFBDUF51
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF51 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC109929
Structural Annotation:  

   

LOC_Os11g37060
Gene Name: OsFBDUF52
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF52 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC137589
Structural Annotation:  

   

LOC_Os11g37300
Gene Name: OsFBDUF53
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF53 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC137588
Structural Annotation:  

   

LOC_Os11g37390
Gene Name: OsFBDUF54
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF54 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC137588
Structural Annotation:  

   

LOC_Os11g38100
Gene Name: OsFBDUF55
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF55 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC137744
Structural Annotation:  

   

LOC_Os11g38120
Gene Name: OsFBDUF56
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF56 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC137744
Structural Annotation:  

   

LOC_Os11g38130
Gene Name: OsFBDUF57
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF57 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC137744
Structural Annotation:  

   

LOC_Os11g38140
Gene Name: OsFBDUF58
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF58 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC137744
Structural Annotation:  

   

LOC_Os11g38180
Gene Name: OsFBDUF59
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF59 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC137744
Structural Annotation:  

   

LOC_Os11g38200
Gene Name: OsFBDUF60
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF60 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AC137744
Structural Annotation:  

   

LOC_Os11g38230
Gene Name: OsFBDUF61
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF61 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC137744
Structural Annotation:  

   

LOC_Os11g38500
Gene Name: OsFBDUF62
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF62 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC114828
Structural Annotation:  

   

LOC_Os11g39609
Gene Name: OsFBDUF63
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF64 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC120984
Structural Annotation:  

   

LOC_Os11g39609
Gene Name: OsFBDUF64
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF64 - F-box and DUF domain containing protein
GenBank Genomic Acc: AC120984
Structural Annotation:  

   

LOC_Os12g05609
Gene Name: OsFBDUF65
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBO24 - F-box and other domain containing protein
GenBank Genomic Acc: AL929350
Structural Annotation:  

   

LOC_Os12g39520
Gene Name: OsFBDUF66
Gene Description: F-box and DUF domain containing protein
MSU Annotation: OsFBDUF66 - F-box and DUF domain containing protein, expressed
GenBank Genomic Acc: AL772423
Structural Annotation:  

 

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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation and funds from the Georgia Research Alliance, Georgia Seed Development, and University of Georgia.