| |
|
| Superfamily: |
F-box proteins |
| Contact: |
Jitendra Khurana |
| Organization: |
University of Delhi |
| Website: |
http://genomeindia.org/DPMB/index.htm |
| Source: |
Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK,
Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and
spatial gene expression during panicle and seed development, and regulation by
light and abiotic stress. Plant Physiology 143(4):1467-83 |
| Criteria: |
BLAST search using the Hidden Markov Model (HMM) profile of F-box domain (PF00646) followed by domain analysis using SMART and PFam with an E-value cut off of less than 1.0. The identified 687 proteins were further classified into 10 subfamilies based upon their domain organization as indicated by the subfamily name. |
| |
|
LOC_Os01g41340 |
| Gene Name: |
OsFBL1 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL1 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP003333 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g41530 |
| Gene Name: |
OsFBL2 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL2 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP003504 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g57920 |
| Gene Name: |
OsFBL3 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL3 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP003345 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g63420 |
| Gene Name: |
OsFBL4 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL4 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP003279 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g64030 |
| Gene Name: |
OsFBL5 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL5 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP003794 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g01550 |
| Gene Name: |
OsFBL6 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL6 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004851 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g10700 |
| Gene Name: |
OsFBL7 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL7 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004869 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g21260 |
| Gene Name: |
OsFBL8 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL8 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004798 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g33400 |
| Gene Name: |
OsFBL9 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL9 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004753 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g04270 |
| Gene Name: |
OsFBL10 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL10 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC099399 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g19750 |
| Gene Name: |
OsFBL11 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL11 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL731611 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g19810 |
| Gene Name: |
OsFBL12 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL12 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL731611 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g19920 |
| Gene Name: |
OsFBL13 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL13 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AL731637 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g30200 |
| Gene Name: |
OsFBL14 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL14 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL731632 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g30210 |
| Gene Name: |
OsFBL15 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL15 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL731632 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g32460 |
| Gene Name: |
OsFBL16 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL16 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL606621 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g35970 |
| Gene Name: |
OsFBL17 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL17 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AL606452 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g40800 |
| Gene Name: |
OsFBL18 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL18 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AL606623 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g42670 |
| Gene Name: |
OsFBL19 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL19 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL731638 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g53510 |
| Gene Name: |
OsFBL20 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL20 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL606669 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g05800 |
| Gene Name: |
OsFBL21 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL21 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC084218 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g35110 |
| Gene Name: |
OsFBL22 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL22 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC109595, AC135419 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g37690 |
| Gene Name: |
OsFBL23 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL23 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC130602 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g39300 |
| Gene Name: |
OsFBL24 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL24 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AC112159 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g45870 |
| Gene Name: |
OsFBL25 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL25 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC097111 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g49980 |
| Gene Name: |
OsFBL26 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL26 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC098832 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g06050 |
| Gene Name: |
OsFBL27 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL27 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP006533 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g07000 |
| Gene Name: |
OsFBL28 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL28 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP002536 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g10300 |
| Gene Name: |
OsFBL29 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL29 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP005652 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g40360 |
| Gene Name: |
OsFBL30 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL30 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP003629 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g50280 |
| Gene Name: |
OsFBL31 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL31 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP003614 |
| Structural Annotation: |
|
|
|
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|
LOC_Os07g02770 |
| Gene Name: |
OsFBL32 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL32 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP003810 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g02910 |
| Gene Name: |
OsFBL33 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL33 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004262 |
| Structural Annotation: |
|
|
|
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|
LOC_Os07g06500 |
| Gene Name: |
OsFBL34 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL34 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP005454 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g06670 |
| Gene Name: |
OsFBL35 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL35 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP003847 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g17460 |
| Gene Name: |
OsFBL36 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL36 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP005475 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g18600 |
| Gene Name: |
OsFBL37 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL37 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP005106 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g31680 |
| Gene Name: |
OsFBL38 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL38 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP005177 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g36900 |
| Gene Name: |
OsFBL39 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL39 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP004261 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g05460 |
| Gene Name: |
OsFBL40 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL40 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP004461 |
| Structural Annotation: |
|
|
|
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|
LOC_Os08g09450 |
| Gene Name: |
OsFBL41 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL41 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP005441 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g09590 |
| Gene Name: |
OsFBL42 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL42 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP004746 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g09640 |
| Gene Name: |
OsFBL43 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL43 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP004746 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g09750 |
| Gene Name: |
OsFBL44 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL44 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004746 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g16840 |
| Gene Name: |
OsFBL45 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL45 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004650 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g23960 |
| Gene Name: |
OsFBL46 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL46 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004759 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g24140 |
| Gene Name: |
OsFBL47 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL47 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP004652 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g35870 |
| Gene Name: |
OsFBL48 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL48 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004707 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g35900 |
| Gene Name: |
OsFBL49 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL49 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004707 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g35930 |
| Gene Name: |
OsFBL50 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL50 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AP004707 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g36000 |
| Gene Name: |
OsFBL51 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL51 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AP005405 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g25680 |
| Gene Name: |
OsFBL52 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL52 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC122144 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g09580 |
| Gene Name: |
OsFBL53 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL53 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AC145323 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g12480 |
| Gene Name: |
OsFBL54 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL54 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC136971 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g31620 |
| Gene Name: |
OsFBL55 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL55 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AC133710 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g33180 |
| Gene Name: |
OsFBL56 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL56 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AC134925 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g33210 |
| Gene Name: |
OsFBL57 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL57 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AC134925 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g42310 |
| Gene Name: |
OsFBL58 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL58 - F-box domain and LRR containing protein |
| GenBank Genomic Acc: |
AC113249 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g33210 |
| Gene Name: |
OsFBL59 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL59 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL731737 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g33230 |
| Gene Name: |
OsFBL60 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL60 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL713944 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g34220 |
| Gene Name: |
OsFBL61 |
| Gene Description: |
F-box domain and LRR containing protein
|
| MSU Annotation: |
OsFBL61 - F-box domain and LRR containing protein, expressed |
| GenBank Genomic Acc: |
AL732377 |
| Structural Annotation: |
|
|
|
| |
