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Rice Gene Annotation
Pseudomolecules
Current Pseudomolecules
Plant GOSlim Assignment of Rice Protiens
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Rice Genome Annotation Project BLAST Search
Processing Your BLAST Request...
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Select type of BLAST Search
blastn
blastx
tblastx
tblastn
blastp
Search a nucleotide database using a nucleotide query sequence.
Select database
Genes in MSU RGAP Release 7 - Genomic Sequences
Genes in MSU RGAP Release 7 - CDS Sequences
Os-Nipponbare-Reference-IRGSP-1.0 Pseudomolecules
All Rice BAC and PAC Sequences in GenBank
Oryza sativa PUTs
Avena sativa PUTs
Brachypodium distachyon PUTs
Festuca arundinacea PUTs
Hordeum vulgare PUTs
Panicum virgatum PUTs
Saccharum officinarum PUTs
Secale cereale PUTs
Sorghum bicolor PUTs
Sorghum propinquum PUTs
Triticum aestivum PUTs
Triticum monococcum PUTs
Triticum turgidum subsp durum PUTs
Zea_mays PUTs
All Poaceae PUTs
Rice Marker Sequences
Rice full length cDNAs in GenBank
Rice FSTs
BGI Indica Contigs
Oryza Repeat Database
Gramineae Repeat Database
TAIR Arabidopsis Annotation Release 10 CDS
TAIR Arabidopsis Annotation Release 10 Genomic
Select the database to search using blastn.
Genes in MSU RGAP Release 7 - Protein Sequences
TAIR Arabidopsis Annotation Release 10 Protein
Select the database to search using blastx.
Enter Query Sequence
Enter FASTA sequence:
Optional BLAST Parameters
Expect Threshold:
1e-200
1e-100
1e-50
1e-20
1e-10
1e-5
1e-4
1e-3
1e-2
1e-1
1
10
100
1000
Max Number of Alignments Reported:
1
5
10
20
50
Word Length:
7
11
15
Word Length:
2
3
Filter:
none
DUST
Filter:
none
SEG
Matrix:
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Submit BLAST Search
Search using blastn
Submit
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation.