Rice homologues of the Arabidopsis Flowering Locus T (FT)
| Contact: | Fabien Chardon |
| Organization: | INRA |
| Source: | Chardon, F., Damerval, C. (2005) Phylogenomic analysis of the PEBP gene family in cereals. Journal of Molecular Evolution. 61:579-590 |
| Criteria: | osTFLs were identified initially as having the PEBP domain (Pfam 01161) and were grouped as a family after phylogenetic analysis. |
| Gene Name: | osFTL8 |
| Gene Description: | Rice FT-Like8 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL8 FT-Like8 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AP003105 |
| Structural Annotation: | |
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| Gene Name: | osFTL1 |
| Alternate Gene Name: | FTL |
| Gene Description: | Rice FT-Like1 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL1 FT-Like1 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AP002745 |
| Structural Annotation: | |
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| Gene Name: | osFTL9 |
| Gene Description: | Rice FT-Like9 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL9 FT-Like9 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| GenBank Genomic Acc: | AP003076 |
| Structural Annotation: | |
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| Gene Name: | osFTL13 |
| Gene Description: | Rice FT-Like13 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL13 FT-Like13 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| GenBank Genomic Acc: | AP004070 |
| Structural Annotation: | |
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| Gene Name: | osFTL5 |
| Gene Description: | Rice FT-Like5 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL5 FT-Like5 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| GenBank Genomic Acc: | AP004124 |
| Structural Annotation: | |
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| Gene Name: | osFTL6 |
| Gene Description: | Rice FT-Like6 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL6 FT-Like6 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AL662946 |
| Structural Annotation: | |
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| Gene Name: | osFTL10 |
| Gene Description: | Rice FT-Like10 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL10 FT-Like10 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AC130603 |
| Structural Annotation: | |
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| Gene Name: | osFTL3 |
| Alternate Gene Name: | RFT1 |
| Gene Description: | Rice FT-Like3 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL3 FT-Like3 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AP005828 |
| Comment: | AB062676 |
| Structural Annotation: | |
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| Gene Name: | osFTL2 |
| Alternate Gene Name: | Hd3a |
| Gene Description: | Rice FT-Like2 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL2 FT-Like2 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AP004844 |
| Comment: | AB052942 |
| Structural Annotation: | |
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| Gene Name: | osFTL12 |
| Gene Description: | Rice FT-Like12 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL12 FT-Like12 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AP003682 |
| Structural Annotation: | |
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| Gene Name: | osFTL4 |
| Alternate Gene Name: | osFT |
| Gene Description: | Rice FT-Like4 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL4 FT-Like4 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AC108760 |
| Structural Annotation: | |
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| Gene Name: | osFTL11 |
| Gene Description: | Rice FT-Like11 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL11 FT-Like11 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| GenBank Genomic Acc: | AC136448 |
| Structural Annotation: | |
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| Gene Name: | osFTL7 |
| Gene Description: | Rice FT-Like7 homologous to Arabidopsis Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein |
| MSU Annotation: | osFTL7 FT-Like7 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed |
| GenBank Genomic Acc: | AL831806 |
| Structural Annotation: | |
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1 Nakagawa, M.m Shimamoto, K., Kyozuka, J. (2002) Overexpression of RCN1 and RCN2, rice TERMINAL FLOWER 1/CENTRORADIALIS homologues, confers delay of phase transition and altered panicle morphology in rice. Plant Journal. 29:743-750. 2 Izawa, T., Takahashi, Y., Yano, M. (2003) Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis. Current Opinion in Plant Biology. 6:113-120. |
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This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation. |