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| Contact: |
Randall Shultz |
| Organization: |
North Carolina State University |
| Source: |
Shultz, RW, Tatineni, VM, Hanely-Bowdoin, L, Thompson, WF (2007) Genome-wide Analysis of the Core DNA Replication Machinery in the Higher Plants Arabidopsis thaliana and Oryza sativa. Plant Physiology 144(4):1697-714
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| Criteria: |
Core DNA replication family proteins are essential for the initiation, elongation, and Okazaki fragment maturation stages of DNA replication. The core DNA replication machinery in rice was defined based on manual inspection of protein sequence alignments to well characterized yeast and animal sequences. |
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LOC_Os01g10690 |
| Gene Name: |
POLD3 |
| Gene Description: |
Putative DNA polymerase delta complex subunit
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| MSU Annotation: |
POLD3 - Putative DNA polymerase delta complex subunit, expressed |
| Structural Annotation: |
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LOC_Os01g14610 |
| Gene Name: |
PSF2 |
| Gene Description: |
Putative GINS complex subunit
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| MSU Annotation: |
PSF2 - Putative GINS complex subunit, expressed |
| Structural Annotation: |
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LOC_Os01g14980 |
| Gene Name: |
RPA3 |
| Gene Description: |
Putative single-stranded DNA binding complex subunit 3
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| MSU Annotation: |
RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed |
| Structural Annotation: |
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LOC_Os01g36390 |
| Gene Name: |
MCM4 |
| Gene Description: |
Putative minichromosome maintenance (MCM) complex subunit 4
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| MSU Annotation: |
MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed |
| Structural Annotation: |
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LOC_Os01g49010 |
| Gene Name: |
ORC4 |
| Gene Description: |
Putative origin recognition complex subunit 4
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| MSU Annotation: |
ORC4 - Putative origin recognition complex subunit 4, expressed |
| Structural Annotation: |
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LOC_Os01g63710 |
| Gene Name: |
CDC6 |
| Gene Description: |
Putative DNA replication initiation protein
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| MSU Annotation: |
CDC6 - Putative DNA replication initiation protein, expressed |
| Structural Annotation: |
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LOC_Os01g64820 |
| Gene Name: |
POLA1 |
| Gene Description: |
Putative DNA polymerase alpha catalytic subunit
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| MSU Annotation: |
POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed |
| Structural Annotation: |
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LOC_Os02g30800 |
| Gene Name: |
POLE1 |
| Gene Description: |
Putative DNA polymerase epsilon catalytic subunit
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| MSU Annotation: |
POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed |
| Structural Annotation: |
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LOC_Os02g42230 |
| Gene Name: |
RPA2B |
| Gene Description: |
Putative single-stranded DNA binding complex subunit 2
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| MSU Annotation: |
RPA2B - Putative single-stranded DNA binding complex subunit 2, expressed |
| Structural Annotation: |
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LOC_Os02g53500 |
| Gene Name: |
RFC5 |
| Gene Description: |
Putative clamp loader (of PCNA), replication factor C subunit 5
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| MSU Annotation: |
RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed |
| Structural Annotation: |
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LOC_Os02g53680 |
| Gene Name: |
RPA1A |
| Gene Description: |
Putative single-stranded DNA binding complex subunit 1
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| MSU Annotation: |
RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed |
| Structural Annotation: |
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LOC_Os02g55410 |
| Gene Name: |
MCM5 |
| Gene Description: |
Putative minichromosome maintenance (MCM) complex subunit 5
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| MSU Annotation: |
MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed |
| Structural Annotation: |
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LOC_Os02g56130 |
| Gene Name: |
PCNA |
| Gene Description: |
Putative DNA replicative polymerase clamp
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| MSU Annotation: |
PCNA - Putative DNA replicative polymerase clamp, expressed |
| Structural Annotation: |
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LOC_Os02g58220 |
| Gene Name: |
RPA2A |
| Gene Description: |
Putative single-stranded DNA binding complex subunit 2
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| MSU Annotation: |
RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed |
| Structural Annotation: |
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LOC_Os03g03650 |
| Gene Name: |
POLD2 |
| Gene Description: |
Putative DNA polymerase delta complex subunit
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| MSU Annotation: |
POLD2 - Putative DNA polymerase delta complex subunit, expressed |
| Structural Annotation: |
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LOC_Os03g08640 |
| Gene Name: |
ORC2 |
| Gene Description: |
Putative origin recognition complex subunit 2
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| MSU Annotation: |
ORC2 - Putative origin recognition complex subunit 2, expressed |
| Structural Annotation: |
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LOC_Os03g11540 |
| Gene Name: |
RPA1B |
| Gene Description: |
Putative single-stranded DNA binding complex subunit 1
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| MSU Annotation: |
RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed |
| Structural Annotation: |
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LOC_Os03g19190 |
| Gene Name: |
TOPBP1C |
| Gene Description: |
Similar to DNA replication protein TOPBP1 from Human
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| MSU Annotation: |
TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed |
| Structural Annotation: |
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LOC_Os03g55200 |
| Gene Name: |
ORC5 |
| Gene Description: |
Putative origin recognition complex subunit 5
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| MSU Annotation: |
ORC5 - Putative origin recognition complex subunit 5, expressed |
| Structural Annotation: |
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LOC_Os03g57870 |
| Gene Name: |
RFC3 |
| Gene Description: |
Putative clamp loader (of PCNA), replication factor C subunit 3
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| MSU Annotation: |
RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed |
| Structural Annotation: |
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LOC_Os03g61820 |
| Gene Name: |
FEN1B |
| Gene Description: |
Putative flap endonuclease protein
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| MSU Annotation: |
FEN1B - Putative flap endonuclease protein, expressed |
| Structural Annotation: |
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LOC_Os04g10650 |
| Gene Name: |
CDT1A |
| Gene Description: |
Putative DNA replication initiation protein
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| MSU Annotation: |
CDT1A - Putative DNA replication initiation protein, expressed |
| Structural Annotation: |
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LOC_Os04g48060 |
| Gene Name: |
RFC2 |
| Gene Description: |
Putative clamp loader (of PCNA), replication factor C subunit 2
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| MSU Annotation: |
RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed |
| Structural Annotation: |
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LOC_Os04g49860 |
| Gene Name: |
DNA2 |
| Gene Description: |
Putative DNA replication helicase 2 protein
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| MSU Annotation: |
DNA2 - Putative DNA replication helicase 2 protein, expressed |
| Structural Annotation: |
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LOC_Os05g02040 |
| Gene Name: |
RPA1C |
| Gene Description: |
Putative single-stranded DNA binding complex subunit 1
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| MSU Annotation: |
RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed |
| Structural Annotation: |
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LOC_Os05g05150 |
| Gene Name: |
SLD5 |
| Gene Description: |
Putative GINS complex subunit
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| MSU Annotation: |
SLD5 - Putative GINS complex subunit, expressed |
| Structural Annotation: |
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LOC_Os05g06840 |
| Gene Name: |
POLE2A |
| Gene Description: |
Putative DNA polymerase epsilon complex subunit
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| MSU Annotation: |
POLE2A - Putative DNA polymerase epsilon complex subunit, expressed |
| Structural Annotation: |
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LOC_Os05g14590 |
| Gene Name: |
MCM6 |
| Gene Description: |
Putative minichromosome maintenance (MCM) complex subunit 6
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| MSU Annotation: |
MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed |
| Structural Annotation: |
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LOC_Os05g29010 |
| Gene Name: |
POLA4 |
| Gene Description: |
Putative DNA polymerase alpha complex subunit
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| MSU Annotation: |
POLA4 - Putative DNA polymerase alpha complex subunit, expressed |
| Structural Annotation: |
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LOC_Os05g37980 |
| Gene Name: |
PSF1 |
| Gene Description: |
Putative GINS complex subunit
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| MSU Annotation: |
PSF1 - Putative GINS complex subunit, expressed |
| Structural Annotation: |
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LOC_Os05g38850 |
| Gene Name: |
MCM8 |
| Gene Description: |
Putative minichromosome maintenance (MCM) family subunit 8
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| MSU Annotation: |
MCM8 - Putative minichromosome maintenance MCM family subunit 8 |
| Structural Annotation: |
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LOC_Os05g39850 |
| Gene Name: |
MCM3 |
| Gene Description: |
Putative minichromosome maintenance (MCM) complex subunit 3
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| MSU Annotation: |
MCM3 - Putative minichromosome maintenance MCM complex subunit 3, expressed |
| Structural Annotation: |
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LOC_Os05g46270 |
| Gene Name: |
FEN1A |
| Gene Description: |
Putative flap endonuclease protein
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| MSU Annotation: |
FEN1A - Putative flap endonuclease protein, expressed |
| Structural Annotation: |
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LOC_Os06g08790 |
| Gene Name: |
ORC1 |
| Gene Description: |
Putative origin recognition complex subunit 1
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| MSU Annotation: |
ORC1 - Putative origin recognition complex subunit 1, expressed |
| Structural Annotation: |
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LOC_Os06g11500 |
| Gene Name: |
MCM9 |
| Gene Description: |
Putative minichromosome maintenance (MCM) family subunit 9
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| MSU Annotation: |
MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed |
| Structural Annotation: |
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LOC_Os06g30320 |
| Gene Name: |
NOC3 |
| Gene Description: |
Putative nucleolar complex subunit 3
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| MSU Annotation: |
NOC3 - Putative nucleolar complex subunit 3, expressed |
| Structural Annotation: |
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LOC_Os06g47830 |
| Gene Name: |
RPA2C |
| Gene Description: |
Putative single-stranded DNA binding complex subunit 2
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| MSU Annotation: |
RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed |
| Structural Annotation: |
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LOC_Os07g22400 |
| Gene Name: |
POLA3 |
| Gene Description: |
Putative DNA polymerase alpha complex subunit
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| MSU Annotation: |
POLA3 - Putative DNA polymerase alpha complex subunit, expressed |
| Structural Annotation: |
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LOC_Os07g43540 |
| Gene Name: |
ORC6 |
| Gene Description: |
Putative origin recognition complex subunit 6
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| MSU Annotation: |
ORC6 - Putative origin recognition complex subunit 6, expressed |
| Structural Annotation: |
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LOC_Os07g49010 |
| Gene Name: |
TOPBP1B |
| Gene Description: |
Similar to DNA replication protein TOPBP1 from Human
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| MSU Annotation: |
TOPBP1B - Similar to DNA replication protein TOPBP1 from, expressed |
| Structural Annotation: |
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LOC_Os08g17294 |
| Gene Name: |
PSF3 |
| Gene Description: |
Putative GINS complex subunit
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| MSU Annotation: |
PSF3 - Putative GINS complex subunit, expressed |
| Structural Annotation: |
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LOC_Os08g36330 |
| Gene Name: |
POLE2B |
| Gene Description: |
Putative DNA polymerase epsilon complex subunit
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| MSU Annotation: |
POLE2B - Putative DNA polymerase epsilon complex subunit, expressed |
| Structural Annotation: |
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LOC_Os08g43080 |
| Gene Name: |
POLD4B |
| Gene Description: |
Putative DNA polymerase delta complex subunit
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| MSU Annotation: |
POLD4B - Putative DNA polymerase delta complex subunit |
| Structural Annotation: |
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LOC_Os09g34850 |
| Gene Name: |
POLD4A |
| Gene Description: |
Putative DNA polymerase delta complex subunit
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| MSU Annotation: |
POLD4A - Putative DNA polymerase delta complex subunit, expressed |
| Structural Annotation: |
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LOC_Os09g36820 |
| Gene Name: |
MCM10 |
| Gene Description: |
Putative minichromosome maintenance (MCM) protein 10
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| MSU Annotation: |
MCM10 - Putative minichromosome maintenance MCM protein 10, expressed |
| Structural Annotation: |
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LOC_Os10g26280 |
| Gene Name: |
ORC3 |
| Gene Description: |
Putative origin recognition complex subunit 3
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| MSU Annotation: |
ORC3 - Putative origin recognition complex subunit 3, expressed |
| Structural Annotation: |
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LOC_Os10g34750 |
| Gene Name: |
LIG1 |
| Gene Description: |
Putative DNA ligase I
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| MSU Annotation: |
LIG1 - Putative DNA ligase I, expressed |
| Structural Annotation: |
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LOC_Os10g34820 |
| Gene Name: |
CDT1B |
| Gene Description: |
Putative DNA replication initiation protein
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| MSU Annotation: |
CDT1B - Putative DNA replication initiation protein, expressed |
| Structural Annotation: |
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LOC_Os11g03430 |
| Gene Name: |
CDC45B |
| Gene Description: |
Putative DNA replication initiation protein
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| MSU Annotation: |
CDC45B - Putative DNA replication initiation protein, expressed |
| Structural Annotation: |
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LOC_Os11g05570 |
| Gene Name: |
RNASEH2A |
| Gene Description: |
Putative ribonuclease H2 large subunit
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| MSU Annotation: |
RNASEH2A - Putative ribonuclease H2 large subunit, expressed |
| Structural Annotation: |
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LOC_Os11g08330 |
| Gene Name: |
POLD1 |
| Gene Description: |
Putative DNA polymerase delta catalytic subunit
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| MSU Annotation: |
POLD1 - Putative DNA polymerase delta catalytic subunit, expressed |
| Structural Annotation: |
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LOC_Os11g08660 |
| Gene Name: |
TOPBP1A |
| Gene Description: |
Similar to DNA replication protein TOPBP1 from Human
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| MSU Annotation: |
TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed |
| Structural Annotation: |
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LOC_Os11g29380 |
| Gene Name: |
MCM2 |
| Gene Description: |
Putative minichromosome maintenance (MCM) complex subunit 2
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| MSU Annotation: |
MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed |
| Structural Annotation: |
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LOC_Os11g36390 |
| Gene Name: |
RFC1 |
| Gene Description: |
Putative clamp loader (of PCNA), replication factor C subunit 1
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| MSU Annotation: |
RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed |
| Structural Annotation: |
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LOC_Os12g03130 |
| Gene Name: |
CDC45A |
| Gene Description: |
Putative DNA replication initiation protein
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| MSU Annotation: |
CDC45A - Putative DNA replication initiation protein, expressed |
| Structural Annotation: |
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LOC_Os12g07720 |
| Gene Name: |
RFC4 |
| Gene Description: |
Putative clamp loader (of PCNA), replication factor C subunit 4
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| MSU Annotation: |
RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed |
| Structural Annotation: |
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LOC_Os12g13950 |
| Gene Name: |
POLA2 |
| Gene Description: |
Putative DNA polymerase alpha complex subunit
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| MSU Annotation: |
POLA2 - Putative DNA polymerase alpha complex subunit, expressed |
| Structural Annotation: |
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LOC_Os12g37400 |
| Gene Name: |
MCM7 |
| Gene Description: |
Putative minichromosome maintenance (MCM) complex subunit 7
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| MSU Annotation: |
MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed |
| Structural Annotation: |
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