Trypsin Family (Peptidase_S1; PF00089)

   
Contact: R. Sowdhamini
Organization: National Centre for Biological Sciences, Bangalore, India
Source: Tripathi LP, Sowdhamini R (2006) Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics. 9;7:200
Criteria: Contains a SP1 domain
   

LOC_Os01g17070
Gene Name: OsDegp1
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp1 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1
Structural Annotation:  

   

LOC_Os02g48180
Gene Name: OsDegp2
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp2 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1, PDZ
Predicted localization2: C
Structural Annotation:  

   

LOC_Os02g50880
Gene Name: OsDegp3
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp3 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1
Predicted localization2: M
Structural Annotation:  

   

LOC_Os03g62900
Gene Name: OsDegp4
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp4 - Putative Deg protease homologue
Comment: Contains the following domain(s)1: SP1
Predicted localization2: M
Structural Annotation:  

   

LOC_Os04g38640
Gene Name: OsDegp5
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp5 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1, PDZ
Predicted localization2: C
Structural Annotation:  

   

LOC_Os05g05480
Gene Name: OsDegp6
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp6 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1
Predicted localization2: C
Structural Annotation:  

   

LOC_Os05g34460
Gene Name: OsDegp7
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp7 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1
Predicted localization2: C
Structural Annotation:  

   

LOC_Os05g41810
Gene Name: OsDegp8
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp8 - Putative Deg protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing3
Contains the following domain(s)1: SP1
Predicted localization2: C
Structural Annotation:  

   

LOC_Os05g49380
Gene Name: OsDegp9
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp9 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1, PDZ
Predicted localization2: C
Structural Annotation:  

   

LOC_Os06g12780
Gene Name: OsDegp10
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp10 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1
Predicted localization2: C
Structural Annotation:  

   

LOC_Os08g04920
Gene Name: OsDegp11
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp11 - Putative Deg protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing3
Contains the following domain(s)1: SP1
Predicted localization2: M
Structural Annotation:  

   

LOC_Os11g14170
Gene Name: OsDegp12
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp12 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1, PDZ
Structural Annotation:  

   

LOC_Os12g04740
Gene Name: OsDegp13
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp13 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1
Structural Annotation:  

   

LOC_Os12g04750
Gene Name: OsDegp14
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp14 - Putative Deg protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing3
Contains the following domain(s)1: SP1
Predicted localization2: C
Structural Annotation:  

   

LOC_Os12g42210
Gene Name: OsDegp15
Gene Description: Putative Deg protease homologue in rice
MSU Annotation: OsDegp15 - Putative Deg protease homologue, expressed
Comment: Contains the following domain(s)1: SP1, PDZ
Structural Annotation:  

 
References:
1SPxx- Serine protease family SPxx domain, where SPxx refers to the serine protease family as per MEROPS classification; PDZ� PDZ domain (Pfam accession: PF00595; PA� Protease associated domain (Pfam accession: PF02225); SN- Subtilisin N-terminal region (Pfam accession: PF005922); D1034- Domain of unknown function (Pfam accession: PF06280); Arf- ADP-ribosylation factor family (Pfam accession: PF00025); C2- C2 domain (Pfam accession: PF00168); zf- Zinc knuckle (Pfam accession: PF00098); rve� Integrase core domain (Pfam accession:PF00665); EX2- Extensin-like region (Pfam accession: PF04554); S9N- Prolyl oligopeptidase, N-terminal beta-propeller domain (Pfam accession: PF02897); PD40- WD40-like beta propeller repeat (Pfam accession: PF07676); DPN- Dipeptidyl peptidase (DPP IV) N-terminal region (Pfam accession: PF00930); Transposase_21- Transposase family tnp2 (Pfam accession: PF02992); Retrotrans- Retrotransposon gag protein (Pfam accession: PF03732); ABC1- ABC1 family (Pfam accession: PF03109); LON- ATP-dependent protease La (LON) domain (Pfam accession: PF02190); AAA- ATPase family associated with various cellular activities (Pfam accession: PF00004); UBA- UBA/TN-S domain (Pfam accession: PF000627)
2 C: chloroplast ; M: mitochondrion S: Secreted. Predictions were made using TargetP (Emanuelsson et al., 2000)
3 Pils and Schultz, (2004); Ross et al.(2003)

NSF Logo This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation.