Rhomboid Protease Family (Peptidase_S54; PF01694)

   
Contact: R. Sowdhamini
Organization: National Centre for Biological Sciences, Bangalore, India
Source: Tripathi LP, Sowdhamini R (2006) Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics. 9;7:200
Criteria: Contains a SP54 domain
   

LOC_Os01g05430
Gene Name: OsRhmbd1
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd1 - Putative Rhomboid homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os01g16330
Gene Name: OsRhmbd2
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd2 - Putative Rhomboid homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP54, UBA
Predicted localization3: M
Structural Annotation:  

   

LOC_Os01g18100
Gene Name: OsRhmbd3
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd3 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os01g55740
Gene Name: OsRhmbd4
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd4 - Putative Rhomboid homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP54
Predicted localization3: M
Structural Annotation:  

   

LOC_Os01g67040
Gene Name: OsRhmbd5
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd5 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os02g22100
Gene Name: OsRhmbd6
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd6 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os03g02530
Gene Name: OsRhmbd7
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd7 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os03g24390
Gene Name: OsRhmbd8
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd8 - Putative Rhomboid homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os03g44830
Gene Name: OsRhmbd9
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd9 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54, UBA
Structural Annotation:  

   

LOC_Os04g01300
Gene Name: OsRhmbd10
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd10 - Putative Rhomboid homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os04g48130
Gene Name: OsRhmbd11
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd11 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os05g13370
Gene Name: OsRhmbd12
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd12 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Predicted localization3: C
Structural Annotation:  

   

LOC_Os07g46170
Gene Name: OsRhmbd13
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd13 - Putative Rhomboid homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os08g43320
Gene Name: OsRhmbd14
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd14 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os09g28100
Gene Name: OsRhmbd15
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd15 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Predicted localization3: C
Structural Annotation:  

   

LOC_Os09g35730
Gene Name: OsRhmbd16
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd16 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os10g37760
Gene Name: OsRhmbd17
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd17 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

   

LOC_Os11g47840
Gene Name: OsRhmbd18
Gene Description: Putative Rhomboid homologue in rice
MSU Annotation: OsRhmbd18 - Putative Rhomboid homologue, expressed
Comment: Contains the following domain(s)2: SP54
Structural Annotation:  

 
References:
1 Pils and Schultz (2004); Ross et al. (2003)
2SPxx- Serine protease family SPxx domain, where SPxx refers to the serine protease family as per MEROPS classification; PDZ� PDZ domain (Pfam accession: PF00595; PA� Protease associated domain (Pfam accession: PF02225); SN- Subtilisin N-terminal region (Pfam accession: PF005922); D1034- Domain of unknown function (Pfam accession: PF06280); Arf- ADP-ribosylation factor family (Pfam accession: PF00025); C2- C2 domain (Pfam accession: PF00168); zf- Zinc knuckle (Pfam accession: PF00098); rve� Integrase core domain (Pfam accession:PF00665); EX2- Extensin-like region (Pfam accession: PF04554); S9N- Prolyl oligopeptidase, N-terminal beta-propeller domain (Pfam accession: PF02897); PD40- WD40-like beta propeller repeat (Pfam accession: PF07676); DPN- Dipeptidyl peptidase (DPP IV) N-terminal region (Pfam accession: PF00930); Transposase_21- Transposase family tnp2 (Pfam accession: PF02992); Retrotrans- Retrotransposon gag protein (Pfam accession: PF03732); ABC1- ABC1 family (Pfam accession: PF03109); LON- ATP-dependent protease La (LON) domain (Pfam accession: PF02190); AAA- ATPase family associated with various cellular activities (Pfam accession: PF00004); UBA- UBA/TN-S domain (Pfam accession: PF000627)
3 C: chloroplast ; M: mitochondrion S: 3ecreted. Predictions were made using TargetP (Emanuelsson et al., 2000)

NSF Logo This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation.