Clp Protease Family (Peptidase_S14; PF00574)

   
Contact: R. Sowdhamini
Organization: National Centre for Biological Sciences, Bangalore, India
Source: Tripathi LP, Sowdhamini R (2006) Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics. 9;7:200
Criteria: Contains a SP14 domain
   

LOC_Os01g16530

Gene Name: OsClp1
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp1 - Putative Clp protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os01g32350

Gene Name: OsClp2
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp2 - Putative Clp protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os02g42290

Gene Name: OsClp3
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp3 - Putative Clp protease homologue, expressed
Comment: Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os03g19510

Gene Name: OsClp4
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp4 - Putative Clp protease homologue, expressed
Comment: Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os03g22430

Gene Name: OsClp5
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp5 - Putative Clp protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os03g29810

Gene Name: OsClp6
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp6 - Putative Clp protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os04g44400

Gene Name: OsClp7
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp7 - Putative Clp protease homologue, expressed
Comment: Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os05g51450

Gene Name: OsClp8
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp8 - Putative Clp protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os06g04530

Gene Name: OsClp9
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp9 - Putative Clp protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os06g39712

Gene Name: OsClp10
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp10 - Putative Clp protease homologue, expressed
Comment: Contains the following domain(s)2: SP14
Predicted localization3: M
Structural Annotation:  

   

LOC_Os10g43050

Gene Name: OsClp11
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp11 - Putative Clp protease homologue, expressed
Comment: Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os11g11210

Gene Name: OsClp12
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp12 - Putative Clp protease homologue, expressed
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP14
Predicted localization3: C
Structural Annotation:  

   

LOC_Os12g10590

Gene Name: OsClp13
Gene Description: Putative Clp protease homologue in rice
MSU Annotation: OsClp13 - Putative Clp protease homologue
Comment: Serine Protease Homologue: one or more catalytic residues are either mutated or missing1
Contains the following domain(s)2: SP14
Structural Annotation:  

 
References:
1 Pils and Schultz (2004); Ross et al. (2003)
2SPxx- Serine protease family SPxx domain, where SPxx refers to the serine protease family as per MEROPS classification; PDZ� PDZ domain (Pfam accession: PF00595; PA� Protease associated domain (Pfam accession: PF02225); SN- Subtilisin N-terminal region (Pfam accession: PF005922); D1034- Domain of unknown function (Pfam accession: PF06280); Arf- ADP-ribosylation factor family (Pfam accession: PF00025); C2- C2 domain (Pfam accession: PF00168); zf- Zinc knuckle (Pfam accession: PF00098); rve� Integrase core domain (Pfam accession:PF00665); EX2- Extensin-like region (Pfam accession: PF04554); S9N- Prolyl oligopeptidase, N-terminal beta-propeller domain (Pfam accession: PF02897); PD40- WD40-like beta propeller repeat (Pfam accession: PF07676); DPN- Dipeptidyl peptidase (DPP IV) N-terminal region (Pfam accession: PF00930); Transposase_21- Transposase family tnp2 (Pfam accession: PF02992); Retrotrans- Retrotransposon gag protein (Pfam accession: PF03732); ABC1- ABC1 family (Pfam accession: PF03109); LON- ATP-dependent protease La (LON) domain (Pfam accession: PF02190); AAA- ATPase family associated with various cellular activities (Pfam accession: PF00004); UBA- UBA/TN-S domain (Pfam accession: PF000627)
3 C: chloroplast ; M: mitochondrion S: secreted. Predictions were made using TargetP (Emanuelsson et al., 2000)

NSF Logo This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation.