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Contact: |
Teerapong Buaboocha |
Organization: |
Chulalongkorn University, Bangkok, Thailand |
Source: |
Bongkoj Boonburapong, Teerapong Buaboocha (2007) Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins. BMC Plant Biology, 7:4 |
Criteria: |
The Oryza sativa L. genome was searched against the Interpro database by five different methods including HMMPfam, HMMSmart, BlastProDom, ProfileScan and superfamily to find proteins that contain calcium-binding EF-hand motifs. Calmodulin-related proteins were identified based on amino acid sequence identity with rice CaM1 and CBL3 and phylogenetic analysis based on amino acid sequence alignments by ClustalX. |
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LOC_Os01g16240 |
Gene Name: |
OsCam1-3 |
Gene Description: |
Calmodulin
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MSU Annotation: |
OsCam1-3 - Calmodulin, expressed |
GenBank Genomic Acc: |
AP000969 |
Mutant Line/Info: |
AG211035 |
Comment: |
AU184693
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Structural Annotation: |
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LOC_Os01g17190 |
Gene Name: |
OsCam3 |
Gene Description: |
Calmodulin
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MSU Annotation: |
OsCam3 - Calmodulin, expressed |
GenBank Genomic Acc: |
AP000815 |
Comment: |
AK058646
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Structural Annotation: |
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LOC_Os03g20370 |
Gene Name: |
OsCam1-1 |
Gene Description: |
Calmodulin
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MSU Annotation: |
OsCam1-1 - Calmodulin, expressed |
GenBank Genomic Acc: |
AC119748 |
Comment: |
AK059756
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Structural Annotation: |
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LOC_Os05g41210 |
Gene Name: |
OsCam2 |
Gene Description: |
Calmodulin
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MSU Annotation: |
OsCam2 - Calmodulin, expressed |
GenBank Genomic Acc: |
AC129718 |
Comment: |
AK059534
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Structural Annotation: |
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LOC_Os07g48780 |
Gene Name: |
OsCam1-2 |
Gene Description: |
Calmodulin
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MSU Annotation: |
OsCam1-2 - Calmodulin, expressed |
GenBank Genomic Acc: |
AP003818 |
Mutant Line/Info: |
AG024320, AG024645, AG212378, AG211036, AG211035 |
Comment: |
AF441191
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Structural Annotation: |
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