| |
|
| Superfamily: |
Cysteine Rich Peptides |
| Contact: |
Kevin Silverstein |
| Organization: |
University of Minnesota |
| Source: |
Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants Plant J. 51(2):262-80 |
| Criteria: |
Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
| |
|
Chr10:10502751..10499697 |
| Gene Name: |
LTPL135 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
The Community Annotated gene is in a large cluster of similar paralogs and may ancestrally have been two genes for which the final exon of the first and the initial exon of the second both died, giving rise to this gene. |
| Structural Annotation: |
|
|
|
| |
|
Chr11:19388670..19388265 |
| Gene Name: |
LTPL171 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
Pseudogene. This Community Annotation is similar to 5 paralogs. |
| Structural Annotation: |
|
|
|
| |
|
Chr11:19391457..19391289 |
| Gene Name: |
LTPL172 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
Pseudogene. The LTP family pseudogene fragment is similar to 6 paralogs, one of them adjacent to this gene. |
| Structural Annotation: |
|
|
|
| |
|
Chr11:19641739..19640975 |
| Gene Name: |
LTPL49 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
High confidence LTP family gene has 3 close paralogs. |
| Structural Annotation: |
|
|
|
| |
|
Chr12:7975789..7976163 |
| Gene Name: |
LTPL34 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
Pseudogene. Highly similar to 2 paralogous genes with same one-exon gene structure. |
| Structural Annotation: |
|
|
|
| |
|
Chr3:25479720..25479358 |
| Gene Name: |
LTPL92 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
Pseudogene. High-confidence LTP with an internal stop-codon is in a large cluster with other similar genes. |
| Structural Annotation: |
|
|
|
| |
|
Chr5:16450608..16451023 |
| Gene Name: |
LTPL19 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
Pseudogene. High-confidence pseudogene with near-identical intact paralog on chromosome 1. |
| Structural Annotation: |
|
|
|
| |
|
Chr7:22197218..22196484 |
| Gene Name: |
LTPL96 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
The first exon of the Community Anntoated gene is of low confidence based on aligned paralogs, but the remaining two exons have highly similar sequences when compared with the paralogs. |
| Structural Annotation: |
|
|
|
| |
|
Chr7:6681771..6681577 |
| Gene Name: |
LTPL167 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
Pseudogene. The Community Annotation structure has a nearly identical intact paralog nearby. |
| Structural Annotation: |
|
|
|
| |
|
Chr7:6686287..6686093 |
| Gene Name: |
LTPL168 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| Comment: |
Pseudogene. The Community Annotation structure has a nearly identical intact paralog nearby. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g12020 |
| Gene Name: |
LTPL18 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL18 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g24590 |
| Gene Name: |
LTPL46 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL46 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. The Community Annotated gene structure appears truncated relative to close paralog. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g42210 |
| Gene Name: |
LTPL47 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL47 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g49640 |
| Gene Name: |
LTPL149 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL149 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g49650 |
| Gene Name: |
LTPL150 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL150 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g58650 |
| Gene Name: |
LTPL35 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL35 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g58660 |
| Gene Name: |
LTPL29 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g59870 |
| Gene Name: |
LTPL65 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g60740 |
| Gene Name: |
LTPL16 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g62980 |
| Gene Name: |
LTPL101 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g68580 |
| Gene Name: |
LTPL38 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL38 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g68589 |
| Gene Name: |
LTPL39 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL39 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g08010 |
| Gene Name: |
LTPL43 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL43 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Comment: |
The Community Annotated gene is in a region of the annotated expressed gene that lacks expression evidence. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g18490 |
| Gene Name: |
LTPL53 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL53 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. The Community Annotated single exon structure has an extremely similar paralog on Chr 7. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g24720 |
| Gene Name: |
LTPL21 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL21 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. The Community Annotation structure is based on two nearly identical paralogous LTP genes on chromosomes 11 and 12. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g44310 |
| Gene Name: |
LTPL112 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g44320 |
| Gene Name: |
LTPL113 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g49280 |
| Gene Name: |
LTPL50 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL50 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g01300 |
| Gene Name: |
LTPL115 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL114 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g01300 |
| Gene Name: |
LTPL114 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL114 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g01320 |
| Gene Name: |
LTPL116 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL116 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g02050 |
| Gene Name: |
LTPL151 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL151 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g07100 |
| Gene Name: |
LTPL82 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g09230 |
| Gene Name: |
LTPL69 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL69 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g14615 |
| Gene Name: |
LTPL117 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL117 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
The Community Annotated single-exon gene encodes an LTP similar to the neighboring duplicate. This LTP has a long proline-rich peptided domain sandwiched between the N-terminal signal peptide and the C-terminal mature CRP peptide which is typical of many classes of CRPs. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g14630 |
| Gene Name: |
LTPL106 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL106 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g14642 |
| Gene Name: |
LTPL107 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL107 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
The Community Annotated single-exon gene encodes an LTP in a large cluster of other like genes that is fully supported by the TIGR Rice Transcript Assembly TA14723_4530 and EST evidence. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g14654 |
| Gene Name: |
LTPL108 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL108 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
The Community Annotated single-exon gene encodes an LTP in a large cluster of other like genes that is fully supported by the TIGR Rice Transcript Assembly TA307_4530, FL-cDNA and EST evidence. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g20760 |
| Gene Name: |
LTPL66 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL66 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g24300 |
| Gene Name: |
LTPL1 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL1 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g25350 |
| Gene Name: |
LTPL36 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL36 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g26800 |
| Gene Name: |
LTPL51 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL51 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g26820 |
| Gene Name: |
LTPL52 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL52 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g43050 |
| Gene Name: |
LTPL90 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL90 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g44000 |
| Gene Name: |
LTPL15 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL15 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g44950 |
| Gene Name: |
LTPL91 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL91 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
The Community Annotated gene excludes the extra exon 5' of start-ATG |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g45150 |
| Gene Name: |
LTPL93 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL93 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
The Community Annotated gene includes the entire signal peptide (first 32 amino acids) |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g46110 |
| Gene Name: |
LTPL94 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL94 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g46150 |
| Gene Name: |
LTPL72 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL72 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g46180 |
| Gene Name: |
LTPL71 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL71 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g47370 |
| Gene Name: |
LTPL95 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL95 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Comment: |
Pseudogene. High-confidence LTP pseudogene (internal stop-codon and frame shift) in a large cluster with other similar genes. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g50960 |
| Gene Name: |
LTPL118 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g57970 |
| Gene Name: |
LTPL73 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g57980 |
| Gene Name: |
LTPL99 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g57990 |
| Gene Name: |
LTPL74 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g58670 |
| Gene Name: |
LTPL119 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL119 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. The Community Annotated gene is based on alignment with close homologs |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g58940 |
| Gene Name: |
LTPL83 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL83 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g59380 |
| Gene Name: |
LTPL28 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL28 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g09520 |
| Gene Name: |
LTPL59 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL59 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g33920 |
| Gene Name: |
LTPL102 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g33930 |
| Gene Name: |
LTPL103 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL103 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g38840 |
| Gene Name: |
LTPL81 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL81 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g46810 |
| Gene Name: |
LTPL120 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g46820 |
| Gene Name: |
LTPL121 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL121 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g46830 |
| Gene Name: |
LTPL122 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g52250 |
| Gene Name: |
LTPL123 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g52260 |
| Gene Name: |
LTPL124 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL124 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g55159 |
| Gene Name: |
LTPL125 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed
|
| MSU Annotation: |
LTPL125 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Comment: |
Pseudogene. This Community Annotated structure is fully supported by five FL-cDNAs and TIGR Rice Transcript Assembly TA5201_4530 and matches the 33 paralogs within CRP4820 LTP family gene HMM with very high sigificance. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g55170 |
| Gene Name: |
LTPL126 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. This Community Annotated structure is based on alignment with close homologs |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g06780 |
| Gene Name: |
LTPL104 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL104 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g40010 |
| Gene Name: |
LTPL17 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL17 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g41030 |
| Gene Name: |
LTPL67 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL67 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g47700 |
| Gene Name: |
LTPL152 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g47730 |
| Gene Name: |
LTPL153 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL153 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g01580 |
| Gene Name: |
LTPL127 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL127 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
The Community Annotated structure is consistent with gene structure of 31 paralogs, and preserves the crucial last cysteine that the annotation omits. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g06340 |
| Gene Name: |
LTPL20 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL20 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g07220 |
| Gene Name: |
LTPL128 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g12440 |
| Gene Name: |
LTPL60 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL60 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g23360 |
| Gene Name: |
LTPL70 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL70 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g34840 |
| Gene Name: |
LTPL5 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL5 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g43600 |
| Gene Name: |
LTPL129 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g46780 |
| Gene Name: |
LTPL61 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g46870 |
| Gene Name: |
LTPL62 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL62 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g47200 |
| Gene Name: |
LTPL85 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g49190 |
| Gene Name: |
LTPL154 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL154 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g49770 |
| Gene Name: |
LTPL86 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL86 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g07790 |
| Gene Name: |
LTPL75 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL75 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g07860 |
| Gene Name: |
LTPL76 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL76 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g07870 |
| Gene Name: |
LTPL77 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL77 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g07920 |
| Gene Name: |
LTPL100 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g07930 |
| Gene Name: |
LTPL78 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g09970 |
| Gene Name: |
LTPL84 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL84 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g11310 |
| Gene Name: |
LTPL166 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL166 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g11630 |
| Gene Name: |
LTPL163 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL163 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g11650 |
| Gene Name: |
LTPL164 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL164 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g12080 |
| Gene Name: |
LTPL169 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g12090 |
| Gene Name: |
LTPL165 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL165 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. The Community Annotation structure preserves the crucial first two cysteines that the annotation omits, and is consistent with the transcript evidence. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g14140 |
| Gene Name: |
LTPL54 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL54 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g18750 |
| Gene Name: |
LTPL42 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g18990 |
| Gene Name: |
LTPL40 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL40 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g19000 |
| Gene Name: |
LTPL41 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL41 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g27940 |
| Gene Name: |
LTPL27 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL27 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g29230 |
| Gene Name: |
LTPL63 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g30590 |
| Gene Name: |
LTPL55 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL55 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g37385 |
| Gene Name: |
LTPL109 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL109 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
The Community Annotated single-exon gene encodes an LTP with high similarity to 5 paralogs. Notably, this gene encodes an intact proline-rich peptide fused to a CRP with N-term and C-term signal peptides, while simultaneously encoding an intact glycine-rich peptide also encompased by signal peptides on the opposite strand. This structure was also observed in Arabidopsis. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g39640 |
| Gene Name: |
LTPL64 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL64 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
The Community Annotated gene has a different frame and encodes an LTP family protein with the classic intron near the 3' end of the gene is highly similar to 5 paralogs. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g43290 |
| Gene Name: |
LTPL56 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL56 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g46210 |
| Gene Name: |
LTPL2 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL2 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g03690 |
| Gene Name: |
LTPL24 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL24 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g15620 |
| Gene Name: |
LTPL170 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL170 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. The Community Annotation is based on homology to 4 paralogs. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g27210 |
| Gene Name: |
LTPL3 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL3 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g27674 |
| Gene Name: |
LTPL130 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL130 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Comment: |
The Community Annotated gene prediction is similar to 34 paralogous genes |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g35665 |
| Gene Name: |
LTPL48 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL48 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
The Community Annotated gene was predicted by GlimmerHMM and its structure is consistent with two paralogous genes. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g38100 |
| Gene Name: |
LTPL131 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL131 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Comment: |
Pseudogene. The Community Annotated structure is highly similar to 38 paralogous genes |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g42040 |
| Gene Name: |
LTPL80 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g43240 |
| Gene Name: |
LTPL97 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL97 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g43290 |
| Gene Name: |
LTPL44 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL44 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os09g13930 |
| Gene Name: |
LTPL4 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL4 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os09g35700 |
| Gene Name: |
LTPL45 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL45 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g05720 |
| Gene Name: |
LTPL37 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g09920 |
| Gene Name: |
LTPL132 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL132 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g11370 |
| Gene Name: |
LTPL87 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL87 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g11730 |
| Gene Name: |
LTPL88 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL88 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g11750 |
| Gene Name: |
LTPL89 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL89 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g20830 |
| Gene Name: |
LTPL133 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL133 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g20840 |
| Gene Name: |
LTPL134 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL134 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g20880 |
| Gene Name: |
LTPL136 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL136 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g20890 |
| Gene Name: |
LTPL137 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL137 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g36070 |
| Gene Name: |
LTPL155 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL155 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g36090 |
| Gene Name: |
LTPL156 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL156 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g36100 |
| Gene Name: |
LTPL157 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL157 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g36110 |
| Gene Name: |
LTPL158 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL158 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g36160 |
| Gene Name: |
LTPL159 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL159 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g36170 |
| Gene Name: |
LTPL160 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL160 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40420 |
| Gene Name: |
LTPL138 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL138 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40430 |
| Gene Name: |
LTPL139 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL139 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40440 |
| Gene Name: |
LTPL140 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL140 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40460 |
| Gene Name: |
LTPL141 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL141 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40470 |
| Gene Name: |
LTPL142 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL142 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40480 |
| Gene Name: |
LTPL143 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL143 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40510 |
| Gene Name: |
LTPL144 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40520 |
| Gene Name: |
LTPL145 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL145 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40530 |
| Gene Name: |
LTPL146 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL146 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g40614 |
| Gene Name: |
LTPL147 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g02165 |
| Gene Name: |
LTPL57 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL57 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
The Community Annotated gene is highly similar to a dozen homologs in other grasses and is fully supported in structure and orientation by TIGR Rice Transcript Assembly CX112109. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g02330 |
| Gene Name: |
LTPL22 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL22 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
Community Annotated gene is translated in a different frame. High-confidence gene correction is completely consistent with the FL-cDNA AK063683 and numerous TIGR Rice Transcript Assemblies including TA3509_4530, plus it is highly similar to two other paralogous LTP genes. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g02350 |
| Gene Name: |
LTPL25 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL25 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g02369 |
| Gene Name: |
LTPL7 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g02379 |
| Gene Name: |
LTPL6 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL6 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g02400 |
| Gene Name: |
LTPL8 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL8 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g02424 |
| Gene Name: |
LTPL9 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL9 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g03870 |
| Gene Name: |
LTPL31 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL31 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
The Community Annotated gene is translated in a different frame and is consistent with more than a dozen grass paralogous genes. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g14880 |
| Gene Name: |
LTPL32 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL32 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
The Community Annotated gene includes an additional 99 bp that is 5' to the gene (encoding the signal peptide and part of the mature peptide). |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g24070 |
| Gene Name: |
LTPL10 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g29420 |
| Gene Name: |
LTPL30 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL30 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g34660 |
| Gene Name: |
LTPL98 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL98 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g37280 |
| Gene Name: |
LTPL68 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL68 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g37320 |
| Gene Name: |
LTPL79 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL79 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g40520 |
| Gene Name: |
LTPL161 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL161 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. This Community Annotated gene is translated in a different frame and is of very high confidence due to alignment with 13 close paralogous genes (one of them adjacent). |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g40530 |
| Gene Name: |
LTPL162 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL162 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g02105 |
| Gene Name: |
LTPL58 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL58 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
The Community Annotated gene is fully supported in orientation and structure by TIGR Rice Transcript Assembly CX112109, and is highly similar to homologs among numerous grasses. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g02290 |
| Gene Name: |
LTPL23 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL23 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Comment: |
The Communtiy Annotated gene includes an additional 39 bp (13 aa) which includes the signal peptide and is virtually identical to a paralog on chromosome 11. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g02300 |
| Gene Name: |
LTPL26 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL26 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g02310 |
| Gene Name: |
LTPL11 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL11 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g02320 |
| Gene Name: |
LTPL12 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL12 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g02330 |
| Gene Name: |
LTPL13 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g02340 |
| Gene Name: |
LTPL14 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, expressed
|
| MSU Annotation: |
LTPL14 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g13960 |
| Gene Name: |
LTPL33 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
The Community Annotated gene has a single exon. This structure is consistent with the transcriptional evidence, and preserves the final crucial cysteines. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g28880 |
| Gene Name: |
LTPL110 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL110 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g29040 |
| Gene Name: |
LTPL111 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor
|
| MSU Annotation: |
LTPL111 - Protease inhibitor/seed storage/LTP family protein precursor |
| Comment: |
Pseudogene. The Community Annotated single exon gene is consistent with gene structure of neighboring paralog and other single-exon genes of its class. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g29160 |
| Gene Name: |
LTPL105 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL105 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Comment: |
This LTP variant is in a cluster with 2 similar paralogs and has the characteristics signal peptide / PRP/ LTP configuration of the CRP4800 and CRP4810 class. This Community Annotated gene was predicted by GlimmerHMM. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g32960 |
| Gene Name: |
LTPL148 |
| Gene Description: |
Protease inhibitor/seed storage/LTP family protein precursor, putative
|
| MSU Annotation: |
LTPL148 - Protease inhibitor/seed storage/LTP family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
