| |
|
| Superfamily: |
Cysteine Rich Peptides |
| Contact: |
Kevin Silverstein |
| Organization: |
University of Minnesota |
| Source: |
Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: |
Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
| |
|
LOC_Os05g26240 |
| Gene Name: |
PROLM1 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM1 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26250 |
| Gene Name: |
PROLM2 |
| Gene Description: |
Prolamin precursor
|
| MSU Annotation: |
PROLM3 - Prolamin precursor, putative, expressed |
| Comment: |
Pseudogene. Community annotation is a single exon and this structure is consistent with gene structure of 20 paralogs and transcript data. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26250 |
| Gene Name: |
PROLM3 |
| Gene Description: |
Prolamin precursor, putative, expressed
|
| MSU Annotation: |
PROLM3 - Prolamin precursor, putative, expressed |
| Comment: |
Pseudogene. Community annotation is fully supported by TIGR Rice Transcript Assemblies TA2578_4530 and 8 others plus FL-cDNA RICPROL14A |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26350 |
| Gene Name: |
PROLM4 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM4 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26359 |
| Gene Name: |
PROLM5 |
| Gene Description: |
Prolamin precursor, putative
|
| MSU Annotation: |
PROLM6 - Prolamin precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26359 |
| Gene Name: |
PROLM6 |
| Gene Description: |
Prolamin precursor, putative
|
| MSU Annotation: |
PROLM6 - Prolamin precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26377 |
| Gene Name: |
PROLM7 |
| Gene Description: |
Prolamin precursor, putative
|
| MSU Annotation: |
PROLM9 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26377 |
| Gene Name: |
PROLM8 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM9 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26377 |
| Gene Name: |
PROLM9 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM9 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26440 |
| Gene Name: |
PROLM10 |
| Gene Description: |
Prolamin precursor, putative
|
| MSU Annotation: |
PROLM10 - Prolamin precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26460 |
| Gene Name: |
PROLM11 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM11 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26480 |
| Gene Name: |
PROLM12 |
| Gene Description: |
Prolamin precursor, putative
|
| MSU Annotation: |
PROLM12 - Prolamin precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26490 |
| Gene Name: |
PROLM13 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM13 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26620 |
| Gene Name: |
PROLM14 |
| Gene Description: |
Prolamin precursor, putative
|
| MSU Annotation: |
PROLM14 - Prolamin precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26690 |
| Gene Name: |
PROLM15 |
| Gene Description: |
Prolamin precursor, putative
|
| MSU Annotation: |
PROLM15 - Prolamin precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26720 |
| Gene Name: |
PROLM16 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM16 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26750 |
| Gene Name: |
PROLM17 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM17 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g26770 |
| Gene Name: |
PROLM18 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM18 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g31060 |
| Gene Name: |
PROLM23 |
| Gene Description: |
Prolamin precursor
|
| MSU Annotation: |
PROLM23 - Prolamin precursor, expressed |
| Comment: |
Pseudogene. Community annotation is a single exon pseudogene and this structure is consistent with gene structure of 5 paralogs and the transcript evidence. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g31070 |
| Gene Name: |
PROLM24 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM24 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g10570 |
| Gene Name: |
PROLM25 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM25 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g10580 |
| Gene Name: |
PROLM26 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM26 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g11900 |
| Gene Name: |
PROLM19 |
| Gene Description: |
Prolamin precursor, putative
|
| MSU Annotation: |
PROLM19 - Prolamin precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g11910 |
| Gene Name: |
PROLM20 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM20 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g11920 |
| Gene Name: |
PROLM21 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM22 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g11920 |
| Gene Name: |
PROLM22 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM22 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g16880 |
| Gene Name: |
PROLM27 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM27 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g16890 |
| Gene Name: |
PROLM28 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM28 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g17010 |
| Gene Name: |
PROLM29 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM29 - Prolamin precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g17030 |
| Gene Name: |
PROLM30 |
| Gene Description: |
Prolamin precursor, expressed
|
| MSU Annotation: |
PROLM30 - Prolamin precursor, expressed |
| Comment: |
Pseudogene. Community annotation model is supported by a dozen TIGR Rice Transcript assemblies including TA2742_4530 and TA2745_4530. |
| Structural Annotation: |
|
|
|
| |
