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| Superfamily: |
Cysteine Rich Peptides |
| Contact: |
Kevin Silverstein |
| Organization: |
University of Minnesota |
| Source: |
Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: |
Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
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Chr10:18497892..18497758 |
| Gene Name: |
RIPER5 |
| Gene Description: |
Ripening-related family protein precursor, putative
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| Comment: |
Pseudogene. Sequence similar to an adjacent cluster of Ripening-related protein encoding genes. |
| Structural Annotation: |
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LOC_Os02g42450 |
| Gene Name: |
RIPER1 |
| Gene Description: |
Ripening-related family protein precursor, expressed
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| MSU Annotation: |
RIPER1 - Ripening-related family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os04g29550 |
| Gene Name: |
RIPER2 |
| Gene Description: |
Ripening-related family protein precursor, expressed
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| MSU Annotation: |
RIPER2 - Ripening-related family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os10g34760 |
| Gene Name: |
RIPER3 |
| Gene Description: |
Ripening-related family protein precursor, putative
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| MSU Annotation: |
RIPER3 - Ripening-related family protein precursor, putative |
| Structural Annotation: |
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LOC_Os10g34770 |
| Gene Name: |
RIPER4 |
| Gene Description: |
Ripening-related family protein precursor, putative
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| MSU Annotation: |
RIPER4 - Ripening-related family protein precursor, putative |
| Structural Annotation: |
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LOC_Os10g34840 |
| Gene Name: |
RIPER6 |
| Gene Description: |
Ripening-related family protein precursor, expressed
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| MSU Annotation: |
RIPER6 - Ripening-related family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os10g34884 |
| Gene Name: |
RIPER7 |
| Gene Description: |
Ripening-related family protein precursor
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| MSU Annotation: |
RIPER7 - Ripening-related family protein precursor, expressed |
| Comment: |
Pseudogene. The community anntoation is consistent with gene structure of 6 paralogs, and preserves several crucial cysteines that the annotation omits. |
| Structural Annotation: |
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LOC_Os10g34896 |
| Gene Name: |
RIPER8 |
| Gene Description: |
Ripening-related family protein precursor
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| MSU Annotation: |
RIPER8 - Ripening-related family protein precursor |
| Comment: |
Pseudogene. Commununity annotation is a single exon and this is consistent with gene structure of 6 paralogs, and preserves several crucial cysteines that the annotation omits. |
| Structural Annotation: |
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LOC_Os10g34902 |
| Gene Name: |
RIPER9 |
| Gene Description: |
Ripening-related family protein precursor, putative
|
| MSU Annotation: |
RIPER9 - Ripening-related family protein precursor, putative |
| Structural Annotation: |
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